[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
1496	8139307	NM_021223	MYL7		myosin, light chain 7, regulatory

Fetching correlation data, please wait...
Getting list of correlations for id 1496.
Getting list of p-values for id 1496.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.136 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8139307	8001496	NM_007006	NUDT21	-0.686246	6.519514e-16	1.129636e-11	1.129636e-11
2	8139307	8018803	NM_003016	SRSF2	-0.655429	3.283749e-14	5.689752e-10	2.844876e-10
3	8139307	8002470	NM_032821	HYDIN	0.654624	3.615745e-14	6.265002e-10	2.088334e-10
4	8139307	7936762	NM_001001976	ATE1	-0.651654	5.144984e-14	8.914714e-10	2.228678e-10
5	8139307	8067506	BC137326	C20orf151	0.650262	6.062272e-14	1.050410e-9	2.100820e-10
6	8139307	7938669	NM_014267	C11orf58	-0.646839	9.041105e-14	1.566552e-9	2.610920e-10
7	8139307	8096556	NM_015143	METAP1	-0.638772	2.273854e-13	3.939908e-9	5.628440e-10
8	8139307	8042335	NM_003375	VDAC2	-0.637800	2.536424e-13	4.394862e-9	5.493577e-10
9	8139307	8022608			0.631707	4.988265e-13	8.643166e-9	9.603518e-10
10	8139307	8049152	NM_000751	CHRND	0.631262	5.237839e-13	9.075604e-9	9.075604e-10
11	8139307	8082928	NM_001002026	CLDN18	0.631259	5.239471e-13	9.078431e-9	8.253119e-10
12	8139307	7931859	NM_017422	CALML5	0.630114	5.939021e-13	1.029054e-8	8.575451e-10
13	8139307	8070867	ENST00000416043		0.629798	6.147151e-13	1.065117e-8	8.193206e-10
14	8139307	7989985	NM_001004439	ITGA11	0.629498	6.351676e-13	1.100555e-8	7.861107e-10
15	8139307	7946860	NM_000352	ABCC8	0.627849	7.596641e-13	1.316270e-8	8.775133e-10
16	8139307	7942717	NM_000260	MYO7A	0.627331	8.034487e-13	1.392136e-8	8.700847e-10
17	8139307	8124889	NM_002701	POU5F1	0.626615	8.680491e-13	1.504069e-8	8.847463e-10
18	8139307	8179719	NM_002701	POU5F1	0.626615	8.680491e-13	1.504069e-8	8.355937e-10
19	8139307	8062695	NM_006275	SRSF6	-0.626612	8.682802e-13	1.504469e-8	7.918258e-10
20	8139307	7925813	NR_027152	C10orf108	0.626293	8.986252e-13	1.557048e-8	7.785240e-10
21	8139307	7912863	NR_002729	MST1P9	0.626134	9.141413e-13	1.583933e-8	7.542537e-10
22	8139307	8092201	NM_024665	TBL1XR1	-0.625369	9.924481e-13	1.719615e-8	7.816431e-10
23	8139307	7979367	NM_006544	EXOC5	-0.623987	1.150745e-12	1.993896e-8	8.669115e-10
24	8139307	8098414	NM_021928	SPCS3	-0.622445	1.356099e-12	2.349712e-8	9.790467e-10
25	8139307	7997582	NM_021197	WFDC1	0.621658	1.474068e-12	2.554117e-8	1.021647e-9
26	8139307	8036460	NM_004647	DPF1	0.621321	1.527699e-12	2.647044e-8	1.018094e-9
27	8139307	8054614	NM_022662	ANAPC1	-0.621121	1.560364e-12	2.703642e-8	1.001349e-9
28	8139307	7974387	NM_145251	STYX	-0.620785	1.616601e-12	2.801085e-8	1.000388e-9
29	8139307	7998910	NM_001103175	CCDC64B	0.620219	1.716055e-12	2.973408e-8	1.025313e-9
30	8139307	8064844	NM_002592	PCNA	-0.619758	1.801536e-12	3.121521e-8	1.040507e-9
31	8139307	8138128	NM_015622	CCZ1	-0.619732	1.806441e-12	3.130020e-8	1.009684e-9
32	8139307	8162998	ENST00000452046		0.619573	1.836772e-12	3.182575e-8	9.945547e-10
33	8139307	8164155	NM_001123355	PPP6C	-0.619022	1.946210e-12	3.372198e-8	1.021878e-9
34	8139307	8077192	NM_000482	APOA4	0.618953	1.960283e-12	3.396583e-8	9.989949e-10
35	8139307	8150908	NM_017813	IMPAD1	-0.618705	2.012001e-12	3.486194e-8	9.960555e-10
36	8139307	7956910	NM_018448	CAND1	-0.618616	2.030781e-12	3.518735e-8	9.774264e-10
37	8139307	8043114	NM_031283	TCF7L1	0.618560	2.042858e-12	3.539661e-8	9.566651e-10
38	8139307	8099926	NM_001100399	PDS5A	-0.618442	2.068244e-12	3.583647e-8	9.430649e-10
39	8139307	8056909	NM_001880	ATF2	-0.618414	2.074215e-12	3.593993e-8	9.215366e-10
40	8139307	8095048	NM_030917	FIP1L1	-0.618182	2.125256e-12	3.682432e-8	9.206080e-10
41	8139307	7936683	NM_001033925	TIAL1	-0.617875	2.194547e-12	3.802492e-8	9.274370e-10
42	8139307	7929674	BC037252	C10orf62	0.617411	2.303534e-12	3.991334e-8	9.503176e-10
43	8139307	8130837	NM_024919	FRMD1	0.617269	2.337868e-12	4.050824e-8	9.420520e-10
44	8139307	8153373	NM_000498	CYP11B2	0.617108	2.377464e-12	4.119432e-8	9.362345e-10
45	8139307	7917156	NM_003902	FUBP1	-0.617087	2.382648e-12	4.128414e-8	9.174254e-10
46	8139307	7993024	NM_139170	C16orf71	0.616962	2.413752e-12	4.182309e-8	9.091975e-10
47	8139307	7947991	NM_015231	NUP160	-0.616787	2.458205e-12	4.259332e-8	9.062408e-10
48	8139307	7937728	NM_001145829	TNNI2	0.616048	2.654511e-12	4.599471e-8	9.582232e-10
49	8139307	8134318	NM_022900	CASD1	-0.615903	2.694841e-12	4.669351e-8	9.529288e-10
50	8139307	8082788	NM_001134422	CDV3	-0.615163	2.909531e-12	5.041345e-8	1.008269e-9

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
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	KEGG Pathway:
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