[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
1435	8016609	NM_005220	DLX3		distal-less homeobox 3

Fetching correlation data, please wait...
Getting list of correlations for id 1435.
Getting list of p-values for id 1435.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.188 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8016609	8038109	NM_017708	FAM83E	0.807243	2.509716e-25	4.348585e-21	4.348585e-21
2	8016609	7935983	NM_005029	PITX3	0.798419	1.976800e-24	3.425201e-20	1.712601e-20
3	8016609	8070933	NM_006657	FTCD	0.790833	1.075690e-23	1.863849e-19	6.212829e-20
4	8016609	7940377	NM_017870	TMEM132A	0.784400	4.286489e-23	7.427199e-19	1.856800e-19
5	8016609	8001041	NM_005205	COX6A2	0.784131	4.537129e-23	7.861484e-19	1.572297e-19
6	8016609	7937560	NM_002457	MUC2	0.781401	8.037563e-23	1.392669e-18	2.321114e-19
7	8016609	8029870	NM_002517	NPAS1	0.779629	1.159784e-22	2.009558e-18	2.870797e-19
8	8016609	8159670	NM_006647	NOXA1	0.779099	1.293320e-22	2.240935e-18	2.801169e-19
9	8016609	8067409	NM_005560	LAMA5	0.775827	2.518867e-22	4.364441e-18	4.849379e-19
10	8016609	7998724	NM_020764	CASKIN1	0.773652	3.898910e-22	6.755642e-18	6.755642e-19
11	8016609	7966690	NM_016569	TBX3	0.773067	4.380911e-22	7.590804e-18	6.900731e-19
12	8016609	8050805	NM_001035256	POMC	0.769804	8.345182e-22	1.445970e-17	1.204975e-18
13	8016609	7985920	NM_001039958	MESP2	0.769239	9.320434e-22	1.614952e-17	1.242271e-18
14	8016609	7945688	NR_003512	INS-IGF2	0.768894	9.970987e-22	1.727673e-17	1.234052e-18
15	8016609	8060334	NM_006943	SOX12	0.766550	1.570377e-21	2.720992e-17	1.813995e-18
16	8016609	8093440	NM_001004356	FGFRL1	0.765731	1.838325e-21	3.185266e-17	1.990791e-18
17	8016609	8059014	NM_017521	FEV	0.765242	2.018927e-21	3.498194e-17	2.057761e-18
18	8016609	7981566	NM_177533	NUDT14	0.763436	2.848937e-21	4.936353e-17	2.742419e-18
19	8016609	8075126	NM_002430	MN1	0.763239	2.957272e-21	5.124066e-17	2.696877e-18
20	8016609	8098740	NM_033178	DUX4	0.762551	3.368624e-21	5.836815e-17	2.918407e-18
21	8016609	8042896	NM_016170	TLX2	0.759745	5.703480e-21	9.882420e-17	4.705914e-18
22	8016609	8033825	NM_015719	COL5A3	0.759692	5.759972e-21	9.980304e-17	4.536502e-18
23	8016609	8121209	NM_005604	POU3F2	0.759351	6.137323e-21	1.063414e-16	4.623539e-18
24	8016609	8019693	NM_148896	NPB	0.759260	6.241874e-21	1.081530e-16	4.506373e-18
25	8016609	8010696	NM_148896	NPB	0.759260	6.241874e-21	1.081530e-16	4.326118e-18
26	8016609	7958577	NM_032829	C12orf34	0.758780	6.823800e-21	1.182360e-16	4.547538e-18
27	8016609	7897416	NM_001080397	SLC45A1	0.758747	6.866299e-21	1.189724e-16	4.406384e-18
28	8016609	8075200	NM_012265	RHBDD3	0.758063	7.793420e-21	1.350366e-16	4.822735e-18
29	8016609	7992049	NM_207112	HAGHL	0.757935	7.979832e-21	1.382665e-16	4.767812e-18
30	8016609	8159142	NM_000093	COL5A1	0.757304	8.964610e-21	1.553298e-16	5.177660e-18
31	8016609	8006562	NM_033315	RASL10B	0.757142	9.235782e-21	1.600284e-16	5.162206e-18
32	8016609	8074565	NM_033257	DGCR6L	0.756923	9.614590e-21	1.665920e-16	5.206000e-18
33	8016609	7960894	NR_024420	LOC389634	0.756883	9.685774e-21	1.678254e-16	5.085618e-18
34	8016609	8098732	NM_033178	DUX4	0.756368	1.064751e-20	1.844894e-16	5.426159e-18
35	8016609	8114550	NM_004883	NRG2	0.755682	1.207177e-20	2.091675e-16	5.976214e-18
36	8016609	8137330	ENST00000356058		0.755523	1.242700e-20	2.153226e-16	5.981183e-18
37	8016609	7955305	NM_001652	AQP6	0.755368	1.278429e-20	2.215134e-16	5.986848e-18
38	8016609	7914260	NM_002379	MATN1	0.754860	1.402215e-20	2.429618e-16	6.393733e-18
39	8016609	8133704	NM_001110199	SRRM3	0.754572	1.477877e-20	2.560718e-16	6.565944e-18
40	8016609	7952011	NM_004588	SCN2B	0.754530	1.488976e-20	2.579949e-16	6.449873e-18
41	8016609	7931571	NM_145202	PRAP1	0.754473	1.504484e-20	2.606820e-16	6.358098e-18
42	8016609	7992269	ENST00000301714		0.753635	1.751344e-20	3.034554e-16	7.225129e-18
43	8016609	7980152	NM_000428	LTBP2	0.753442	1.813680e-20	3.142563e-16	7.308285e-18
44	8016609	8164328	NM_173492	PIP5KL1	0.753313	1.856595e-20	3.216922e-16	7.311186e-18
45	8016609	7949015	NM_001144936	C11orf95	0.752791	2.039665e-20	3.534128e-16	7.853618e-18
46	8016609	7955869	NM_022658	HOXC8	0.752511	2.145283e-20	3.717131e-16	8.080721e-18
47	8016609	7933310	ENST00000319426		0.752227	2.257627e-20	3.911791e-16	8.322959e-18
48	8016609	8125568	NM_080680	COL11A2	0.752187	2.274204e-20	3.940514e-16	8.209404e-18
49	8016609	7899284	NM_001013642	TRNP1	0.751385	2.625901e-20	4.549899e-16	9.285508e-18
50	8016609	8024048	NM_002777	PRTN3	0.751357	2.639296e-20	4.573109e-16	9.146217e-18

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
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	with keyword:
	KEGG Pathway:
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Remove	"self correlations", i.e. correlations of a variable with itself
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