[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
3612	7952011	NM_004588	SCN2B		sodium channel, voltage-gated, type II, beta

Fetching correlation data, please wait...
Getting list of correlations for id 3612.
Getting list of p-values for id 3612.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.178 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	7952011	7947991	NM_015231	NUP160	-0.797123	2.653857e-24	4.598338e-20	4.598338e-20
2	7952011	7945688	NR_003512	INS-IGF2	0.796668	2.941533e-24	5.096793e-20	2.548397e-20
3	7952011	8112121	NM_173514	SLC38A9	-0.788465	1.799595e-23	3.118158e-19	1.039386e-19
4	7952011	7937560	NM_002457	MUC2	0.788203	1.903864e-23	3.298826e-19	8.247065e-20
5	7952011	8001014	NM_173502	PRSS36	0.784350	4.332450e-23	7.506836e-19	1.501367e-19
6	7952011	8070933	NM_006657	FTCD	0.783321	5.380841e-23	9.323383e-19	1.553897e-19
7	7952011	8149652	NM_005144	HR	0.782967	5.795555e-23	1.004196e-18	1.434565e-19
8	7952011	7955305	NM_001652	AQP6	0.781526	7.831439e-23	1.356953e-18	1.696192e-19
9	7952011	8120698	NM_133645	MTO1	-0.780457	9.775563e-23	1.693812e-18	1.882013e-19
10	7952011	8104122	NM_033178	DUX4	0.779224	1.260472e-22	2.184019e-18	2.184019e-19
11	7952011	8136401	NM_015135	NUP205	-0.777915	1.648189e-22	2.855817e-18	2.596197e-19
12	7952011	7952893	BC024764	IQSEC3	0.777241	1.891152e-22	3.276799e-18	2.730666e-19
13	7952011	8026407	NM_033025	SYDE1	0.776359	2.261775e-22	3.918978e-18	3.014599e-19
14	7952011	8087907	NM_020163	SEMA3G	0.774723	3.145870e-22	5.450849e-18	3.893463e-19
15	7952011	8096556	NM_015143	METAP1	-0.774538	3.264754e-22	5.656839e-18	3.771226e-19
16	7952011	8105778	NM_181523	PIK3R1	-0.774275	3.441484e-22	5.963059e-18	3.726912e-19
17	7952011	8098740	NM_033178	DUX4	0.772913	4.517662e-22	7.827753e-18	4.604560e-19
18	7952011	8115691	NM_003062	SLIT3	0.770859	6.784167e-22	1.175493e-17	6.530514e-19
19	7952011	8079021	NM_001904	CTNNB1	-0.770530	7.237899e-22	1.254111e-17	6.600583e-19
20	7952011	7987701	NM_016642	SPTBN5	0.769936	8.131979e-22	1.409028e-17	7.045140e-19
21	7952011	8098732	NM_033178	DUX4	0.769366	9.092458e-22	1.575450e-17	7.502144e-19
22	7952011	8130567	NM_030752	TCP1	-0.768645	1.046694e-21	1.813607e-17	8.243666e-19
23	7952011	8042335	NM_003375	VDAC2	-0.768459	1.085225e-21	1.880369e-17	8.175518e-19
24	7952011	8153101	NM_152888	COL22A1	0.768016	1.182742e-21	2.049337e-17	8.538903e-19
25	7952011	7935983	NM_005029	PITX3	0.767780	1.238112e-21	2.145276e-17	8.581105e-19
26	7952011	8131195	NM_133463	AMZ1	0.767688	1.260484e-21	2.184040e-17	8.400153e-19
27	7952011	8116195	NM_173465	COL23A1	0.767257	1.370247e-21	2.374226e-17	8.793431e-19
28	7952011	8067820	BC024764	IQSEC3	0.767171	1.393040e-21	2.413721e-17	8.620431e-19
29	7952011	8125383	NM_004557	NOTCH4	0.766582	1.560762e-21	2.704332e-17	9.325282e-19
30	7952011	8014269	NM_139285	GAS2L2	0.766293	1.650254e-21	2.859396e-17	9.531319e-19
31	7952011	8134827	NM_173564	C7orf51	0.765901	1.779376e-21	3.083125e-17	9.945565e-19
32	7952011	8044263	NM_006267	RANBP2	-0.765388	1.963585e-21	3.402304e-17	1.063220e-18
33	7952011	7921583	NM_001098398	COPA	-0.765069	2.087258e-21	3.616591e-17	1.095937e-18
34	7952011	8125234	NM_019105	TNXB	0.764347	2.395452e-21	4.150599e-17	1.220765e-18
35	7952011	8054614	NM_022662	ANAPC1	-0.763494	2.817702e-21	4.882231e-17	1.394923e-18
36	7952011	8086810	NM_003074	SMARCC1	-0.763314	2.915542e-21	5.051760e-17	1.403267e-18
37	7952011	8001449	NM_024336	IRX3	0.763117	3.026254e-21	5.243590e-17	1.417186e-18
38	7952011	8098512	NM_021942	C4orf41	-0.761534	4.079880e-21	7.069207e-17	1.860318e-18
39	7952011	8024100	NM_138690	GRIN3B	0.761507	4.100915e-21	7.105655e-17	1.821963e-18
40	7952011	8067409	NM_005560	LAMA5	0.760734	4.740978e-21	8.214692e-17	2.053673e-18
41	7952011	8107646	NM_001136239	PRDM6	0.760582	4.877749e-21	8.451676e-17	2.061384e-18
42	7952011	8153876	NM_025251	ARHGAP39	0.759920	5.520403e-21	9.565202e-17	2.277429e-18
43	7952011	8056909	NM_001880	ATF2	-0.759862	5.580515e-21	9.669358e-17	2.248688e-18
44	7952011	8032699	NM_015174	ZFR2	0.759034	6.509685e-21	1.127933e-16	2.563484e-18
45	7952011	8083523	NM_003875	GMPS	-0.758947	6.615259e-21	1.146226e-16	2.547169e-18
46	7952011	7992302	NM_020825	CRAMP1L	0.758865	6.717405e-21	1.163925e-16	2.530271e-18
47	7952011	8051187	NM_022823	FNDC4	0.758545	7.127514e-21	1.234984e-16	2.627626e-18
48	7952011	8064031	NM_139317	BIRC7	0.758535	7.140407e-21	1.237218e-16	2.577538e-18
49	7952011	7898377	NM_014675	CROCC	0.758458	7.244088e-21	1.255183e-16	2.561598e-18
50	7952011	8006562	NM_033315	RASL10B	0.757833	8.130905e-21	1.408842e-16	2.817684e-18

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
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