[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
7155	8005313	NM_001388	DRG2		developmentally regulated GTP binding protein 2

Fetching correlation data, please wait...
Getting list of correlations for id 7155.
Getting list of p-values for id 7155.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.120 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8005313	8014925	NM_014815	MED24	0.562332	4.307382e-10	7.463401e-6	7.463401e-6
2	8005313	7996675	NM_020457	THAP11	0.550045	1.218810e-9	2.111832e-5	1.055916e-5
3	8005313	8016552	NM_002634	PHB	0.547049	1.560756e-9	2.704321e-5	9.014405e-6
4	8005313	7920594	NM_138300	PYGO2	0.544300	1.954140e-9	3.385938e-5	8.464845e-6
5	8005313	7940824	NM_024771	NAA40	0.534848	4.168413e-9	7.222609e-5	1.444522e-5
6	8005313	7990417	NM_005697	SCAMP2	0.534235	4.374626e-9	7.579914e-5	1.263319e-5
7	8005313	8098880	NM_001012614	CTBP1	0.531084	5.599781e-9	9.702741e-5	1.386106e-5
8	8005313	8037695	NM_004819	SYMPK	0.520282	1.281145e-8	2.219841e-4	2.774801e-5
9	8005313	8026315	NM_213560	PKN1	0.517771	1.546476e-8	2.679579e-4	2.977310e-5
10	8005313	8140061	NM_001707	BCL7B	0.515624	1.814421e-8	3.143848e-4	3.143848e-5
11	8005313	7937900	NM_003156	STIM1	0.514804	1.928058e-8	3.340746e-4	3.037042e-5
12	8005313	8134992	NM_015908	SRRT	0.513940	2.055035e-8	3.560760e-4	2.967300e-5
13	8005313	7920697	NM_000157	GBA	0.511852	2.396065e-8	4.151661e-4	3.193586e-5
14	8005313	8010512	NM_020761	RPTOR	0.510875	2.573401e-8	4.458932e-4	3.184951e-5
15	8005313	8175947	NM_005334	HCFC1	0.505767	3.725787e-8	6.455671e-4	4.303780e-5
16	8005313	8054077	NM_005735	ACTR1B	0.504247	4.154615e-8	7.198701e-4	4.499188e-5
17	8005313	7913110	BC034589	KIAA0090	0.503705	4.318550e-8	7.482751e-4	4.401618e-5
18	8005313	8077042	NM_002972	SBF1	0.500417	5.454222e-8	9.450531e-4	5.250295e-5
19	8005313	8012212	NM_020899	ZBTB4	0.499308	5.897529e-8	1.021865e-3	5.378236e-5
20	8005313	7977584	NM_001100814	TMEM55B	0.497649	6.626132e-8	1.148110e-3	5.740550e-5
21	8005313	8010161	NM_006640	SEPT9	0.495009	7.965073e-8	1.380108e-3	6.571943e-5
22	8005313	7998211	NM_003502	AXIN1	0.494907	8.021270e-8	1.389845e-3	6.317480e-5
23	8005313	8026272	NM_004843	IL27RA	0.487650	1.319659e-7	2.286573e-3	9.941622e-5
24	8005313	7956076	NM_001798	CDK2	0.487357	1.346073e-7	2.332341e-3	9.718086e-5
25	8005313	8033162	NM_003685	KHSRP	0.486064	1.469063e-7	2.545446e-3	1.018178e-4
26	8005313	7997626	NM_024731	KLHL36	0.484765	1.603335e-7	2.778098e-3	1.068499e-4
27	8005313	7950086	NM_006185	NUMA1	0.483283	1.770708e-7	3.068107e-3	1.136336e-4
28	8005313	8134777	NM_024070	PVRIG	0.482484	1.867767e-7	3.236280e-3	1.155814e-4
29	8005313	8015526	NM_021078	KAT2A	0.478066	2.502644e-7	4.336331e-3	1.495286e-4
30	8005313	8034021	NM_007065	CDC37	0.477427	2.610006e-7	4.522357e-3	1.507452e-4
31	8005313	7948229	NM_017611	SLC43A3	0.474812	3.096604e-7	5.365485e-3	1.730802e-4
32	8005313	8032418	NM_003938	AP3D1	0.465761	5.534579e-7	9.589764e-3	2.996801e-4
33	8005313	7976292	NM_024832	RIN3	0.464675	5.927617e-7	1.027078e-2	3.112358e-4
34	8005313	8076176	NM_014292	CBX6	0.463976	6.194163e-7	1.073263e-2	3.156655e-4
35	8005313	8026163	NM_004907	IER2	0.458116	8.923924e-7	1.546248e-2	4.417853e-4
36	8005313	7997197	NM_014003	DHX38	0.456332	9.959773e-7	1.725730e-2	4.793694e-4
37	8005313	8158513	NM_020438	DOLPP1	0.456178	1.005464e-6	1.742167e-2	4.708559e-4
38	8005313	8087283	NM_005051	QARS	0.454786	1.094895e-6	1.897124e-2	4.992432e-4
39	8005313	8171336	ENST00000411014		-0.453811	1.161943e-6	2.013299e-2	5.162306e-4
40	8005313	8011640	NM_014520	MYBBP1A	0.453598	1.177123e-6	2.039601e-2	5.099003e-4
41	8005313	8012856	NM_018127	ELAC2	0.452965	1.223347e-6	2.119693e-2	5.169982e-4
42	8005313	8063394	NM_002827	PTPN1	0.450845	1.390773e-6	2.409792e-2	5.737601e-4
43	8005313	8006984	NM_002809	PSMD3	0.450822	1.392744e-6	2.413208e-2	5.612111e-4
44	8005313	8002312	NM_014062	NOB1	0.450309	1.436456e-6	2.488948e-2	5.656700e-4
45	8005313	7905598	NM_012437	SNAPIN	0.449511	1.507067e-6	2.611295e-2	5.802879e-4
46	8005313	7944382	NM_021729	VPS11	0.449491	1.508957e-6	2.614569e-2	5.683846e-4
47	8005313	8060274	NM_015963	THAP4	0.448927	1.560815e-6	2.704424e-2	5.754094e-4
48	8005313	8077250	NM_015963	THAP4	0.448927	1.560815e-6	2.704424e-2	5.634217e-4
49	8005313	8143684	NM_004911	PDIA4	0.448871	1.566149e-6	2.713667e-2	5.538096e-4
50	8005313	8118174	NM_080686	BAT2	0.448868	1.566365e-6	2.714040e-2	5.428080e-4

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
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