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Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Search Options: Find correlations between...
Gene/Label/Number: and (Empty also means "all others")
Output Options
Restrict output to miRs, Transcription factors? (Empty: No restrictions.)
  with keyword:
 KEGG Pathway:
Limit output to rows.
Remove "self correlations", i.e. correlations of a variable with itself
Sort results by positive, negative or absolute value of correlation
Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id Label1 AccNum GeneSym Info Gene Name
1578 8004571 NM_001406 EFNB3 link to infopage ephrin-B3

Fetching correlation data, please wait...
Getting list of correlations for id 1578.
Getting list of p-values for id 1578.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.125 seconds. Transmitting 50 results:

Column legend:

Rank Label1 Label2 AccNum GeneSym Info Pearson r Raw p Bonferroni FDR (BH)
1 8004571 7995322 link to infopage 0.655821 3.133080e-14 5.428688e-10 5.428688e-10
2 8004571 8170753 NM_014370 SRPK3 link to infopage 0.649169 6.891281e-14 1.194052e-9 5.970261e-10
3 8004571 8072817 NM_152243 CDC42EP1 link to infopage 0.643217 1.372516e-13 2.378158e-9 7.927193e-10
4 8004571 8086985 NM_000094 COL7A1 link to infopage 0.638519 2.339438e-13 4.053543e-9 1.013386e-9
5 8004571 7904997 NM_001143883 PPIAL4B link to infopage -0.636469 2.943918e-13 5.100926e-9 1.020185e-9
6 8004571 7905016 NM_001143883 PPIAL4B link to infopage -0.636469 2.943918e-13 5.100926e-9 8.501544e-10
7 8004571 7902594 NM_182948 PRKACB link to infopage -0.630656 5.597369e-13 9.698561e-9 1.385509e-9
8 8004571 8125568 NM_080680 COL11A2 link to infopage 0.627920 7.538769e-13 1.306242e-8 1.632803e-9
9 8004571 7908022 NM_001357 DHX9 link to infopage -0.627851 7.595237e-13 1.316027e-8 1.462252e-9
10 8004571 8101099 NM_018115 SDAD1 link to infopage -0.626919 8.400063e-13 1.455479e-8 1.455479e-9
11 8004571 8073623 NM_001044370 MPPED1 link to infopage 0.625989 9.284938e-13 1.608801e-8 1.462547e-9
12 8004571 8014269 NM_139285 GAS2L2 link to infopage 0.623795 1.174562e-12 2.035163e-8 1.695969e-9
13 8004571 8066590 NM_003279 TNNC2 link to infopage 0.621680 1.470700e-12 2.548281e-8 1.960216e-9
14 8004571 8105136 NM_003432 ZNF131 link to infopage -0.620439 1.676717e-12 2.905247e-8 2.075176e-9
15 8004571 8116195 NM_173465 COL23A1 link to infopage 0.620246 1.711179e-12 2.964960e-8 1.976640e-9
16 8004571 7968711 NR_026745 COG6 link to infopage -0.619343 1.881668e-12 3.260366e-8 2.037729e-9
17 8004571 8153101 NM_152888 COL22A1 link to infopage 0.619119 1.926471e-12 3.337997e-8 1.963527e-9
18 8004571 8083523 NM_003875 GMPS link to infopage -0.618944 1.962193e-12 3.399893e-8 1.888829e-9
19 8004571 7934513 NM_207012 AP3M1 link to infopage -0.618263 2.107316e-12 3.651347e-8 1.921762e-9
20 8004571 7921625 NM_052931 SLAMF6 link to infopage -0.616852 2.441797e-12 4.230901e-8 2.115451e-9
21 8004571 8056909 NM_001880 ATF2 link to infopage -0.614451 3.131782e-12 5.426439e-8 2.584018e-9
22 8004571 7919436 NM_178230 PPIAL4A link to infopage -0.613995 3.282703e-12 5.687939e-8 2.585427e-9
23 8004571 7992302 NM_020825 CRAMP1L link to infopage 0.613701 3.383581e-12 5.862730e-8 2.549013e-9
24 8004571 8071927 NM_005265 GGT1 link to infopage 0.613635 3.406562e-12 5.902550e-8 2.459396e-9
25 8004571 7946275 NR_003945 GVIN1 link to infopage -0.612945 3.657016e-12 6.336511e-8 2.534604e-9
26 8004571 8136401 NM_015135 NUP205 link to infopage -0.612286 3.912631e-12 6.779416e-8 2.607468e-9
27 8004571 8104592 NM_012304 FBXL7 link to infopage 0.611436 4.268114e-12 7.395361e-8 2.739023e-9
28 8004571 8001496 NM_007006 NUDT21 link to infopage -0.611178 4.381801e-12 7.592346e-8 2.711552e-9
29 8004571 7995336 link to infopage 0.611030 4.448657e-12 7.708188e-8 2.657996e-9
30 8004571 8150433 NM_152568 NKX6-3 link to infopage 0.610978 4.472441e-12 7.749399e-8 2.583133e-9
31 8004571 8023757 NM_006566 CD226 link to infopage -0.610798 4.555143e-12 7.892696e-8 2.546031e-9
32 8004571 8128260 NM_145331 MAP3K7 link to infopage -0.610738 4.583190e-12 7.941294e-8 2.481654e-9
33 8004571 7950701 NM_001098816 ODZ4 link to infopage 0.609573 5.159588e-12 8.940019e-8 2.709097e-9
34 8004571 7995340 link to infopage 0.608775 5.594273e-12 9.693197e-8 2.850940e-9
35 8004571 7947991 NM_015231 NUP160 link to infopage -0.607387 6.435119e-12 1.115013e-7 3.185751e-9
36 8004571 8103859 NM_001012732 DCTD link to infopage -0.607290 6.498739e-12 1.126036e-7 3.127879e-9
37 8004571 7945688 NR_003512 INS-IGF2 link to infopage 0.605811 7.539241e-12 1.306324e-7 3.530606e-9
38 8004571 8091648 NM_007107 SSR3 link to infopage -0.605787 7.557404e-12 1.309471e-7 3.445977e-9
39 8004571 7980296 NM_006827 TMED10 link to infopage -0.605156 8.049269e-12 1.394697e-7 3.576146e-9
40 8004571 8164632 NM_032843 FIBCD1 link to infopage 0.604967 8.202803e-12 1.421300e-7 3.553249e-9
41 8004571 7995334 link to infopage 0.602952 1.002372e-11 1.736810e-7 4.236122e-9
42 8004571 8081564 NM_198196 CD96 link to infopage -0.601850 1.117949e-11 1.937071e-7 4.612073e-9
43 8004571 8103289 NM_002669 PLRG1 link to infopage -0.601521 1.154866e-11 2.001037e-7 4.653574e-9
44 8004571 8171786 NM_153270 KLHL34 link to infopage 0.600798 1.240056e-11 2.148645e-7 4.883284e-9
45 8004571 7914880 NM_005202 COL8A2 link to infopage 0.600438 1.284790e-11 2.226155e-7 4.947011e-9
46 8004571 8053872 NM_001002036 ASTL link to infopage 0.600336 1.297765e-11 2.248637e-7 4.888341e-9
47 8004571 8131539 NM_018374 TMEM106B link to infopage -0.599956 1.347127e-11 2.334167e-7 4.966312e-9
48 8004571 8157383 NM_032888 COL27A1 link to infopage 0.599896 1.355017e-11 2.347837e-7 4.891328e-9
49 8004571 8099926 NM_001100399 PDS5A link to infopage -0.599530 1.404536e-11 2.433640e-7 4.966612e-9
50 8004571 7968242 NM_002097 GTF3A link to infopage -0.599451 1.415477e-11 2.452596e-7 4.905193e-9

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

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