[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
6376	8109629	NM_001040442	FABP6		fatty acid binding protein 6, ileal

Fetching correlation data, please wait...
Getting list of correlations for id 6376.
Getting list of p-values for id 6376.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.143 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8109629	8100782			0.672807	3.815691e-15	6.611449e-11	6.611449e-11
2	8109629	8035646	NM_023002	HAPLN4	0.662397	1.409252e-14	2.441810e-10	1.220905e-10
3	8109629	7996430	NM_001040667	HSF4	0.660332	1.814866e-14	3.144619e-10	1.048206e-10
4	8109629	8033825	NM_015719	COL5A3	0.655705	3.176740e-14	5.504337e-10	1.376084e-10
5	8109629	8138108	NM_006854	KDELR2	-0.654662	3.599332e-14	6.236563e-10	1.247313e-10
6	8109629	8031999	NM_003712	PPAP2C	0.640112	1.954582e-13	3.386705e-9	5.644508e-10
7	8109629	8165674	AY423734	SH3KBP1	-0.636789	2.840627e-13	4.921954e-9	7.031363e-10
8	8109629	7928870	ENST00000363306		0.635257	3.369977e-13	5.839158e-9	7.298948e-10
9	8109629	8056825	NM_001145250	SP9	0.632665	4.489364e-13	7.778722e-9	8.643024e-10
10	8109629	8157383	NM_032888	COL27A1	0.632570	4.536920e-13	7.861122e-9	7.861122e-10
11	8109629	8032595	NM_031304	DOHH	0.631668	5.010024e-13	8.680869e-9	7.891699e-10
12	8109629	7950490	hsa-mir-326		0.631587	5.054391e-13	8.757743e-9	7.298119e-10
13	8109629	7967707	ENST00000363646		0.626831	8.480200e-13	1.469364e-8	1.130280e-9
14	8109629	7995352			0.626680	8.619764e-13	1.493546e-8	1.066819e-9
15	8109629	7998265	AK097604	LOC100130285	0.626301	8.978630e-13	1.555727e-8	1.037151e-9
16	8109629	8176159	NM_020994	CTAG2	0.619780	1.797280e-12	3.114147e-8	1.946342e-9
17	8109629	7939665	NM_001012334	MDK	0.619735	1.805886e-12	3.129059e-8	1.840623e-9
18	8109629	8064370	NM_004609	TCF15	0.618168	2.128309e-12	3.687720e-8	2.048733e-9
19	8109629	7995342			0.617026	2.397790e-12	4.154651e-8	2.186658e-9
20	8109629	8076747	AK123383	LOC642648	0.616432	2.550746e-12	4.419677e-8	2.209838e-9
21	8109629	8175537	AK093505	CXorf18	0.615250	2.883344e-12	4.995970e-8	2.379033e-9
22	8109629	7945652	NM_001012708	KRTAP5-3	0.614367	3.158976e-12	5.473558e-8	2.487981e-9
23	8109629	8073623	NM_001044370	MPPED1	0.612810	3.707987e-12	6.424830e-8	2.793404e-9
24	8109629	8145555	NM_016240	SCARA3	0.606820	6.812895e-12	1.180470e-7	4.918626e-9
25	8109629	8019010	NM_020649	CBX8	0.606123	7.307208e-12	1.266120e-7	5.064480e-9
26	8109629	7985571	NR_026811	LOC80154	0.604543	8.557330e-12	1.482729e-7	5.702802e-9
27	8109629	8036479	NM_033557	YIF1B	0.604130	8.916554e-12	1.544971e-7	5.722116e-9
28	8109629	7985431	NR_026811	LOC80154	0.603666	9.337800e-12	1.617961e-7	5.778431e-9
29	8109629	8106769	XR_019029	LOC645181	0.599671	1.385230e-11	2.400188e-7	8.276510e-9
30	8109629	7954434	ENST00000410223		0.598725	1.519625e-11	2.633054e-7	8.776846e-9
31	8109629	7955829	NM_134323	TARBP2	0.597833	1.657841e-11	2.872541e-7	9.266262e-9
32	8109629	8029640	NM_212550	BLOC1S3	0.597343	1.738817e-11	3.012849e-7	9.415152e-9
33	8109629	8033433	NM_198492	CLEC4G	0.596830	1.827599e-11	3.166681e-7	9.596003e-9
34	8109629	7990952	NR_026811	LOC80154	0.596760	1.840082e-11	3.188310e-7	9.377383e-9
35	8109629	8159501	NM_178536	LCN12	0.595304	2.118706e-11	3.671082e-7	1.048880e-8
36	8109629	8048639	NM_002191	INHA	0.594338	2.325433e-11	4.029277e-7	1.119244e-8
37	8109629	8165665	NC_001807		-0.593987	2.405338e-11	4.167728e-7	1.126413e-8
38	8109629	8150433	NM_152568	NKX6-3	0.591297	3.111544e-11	5.391372e-7	1.418782e-8
39	8109629	8052676			0.590823	3.255031e-11	5.639992e-7	1.446152e-8
40	8109629	8035506	NM_004750	CRLF1	0.590757	3.275619e-11	5.675665e-7	1.418916e-8
41	8109629	7974047	NM_001049	SSTR1	0.589601	3.655414e-11	6.333737e-7	1.544814e-8
42	8109629	7959880	ENST00000459050		0.589076	3.841367e-11	6.655937e-7	1.584747e-8
43	8109629	8163731			0.588696	3.981729e-11	6.899142e-7	1.604452e-8
44	8109629	7991088	NR_027001	LOC388152	0.588644	4.001563e-11	6.933509e-7	1.575797e-8
45	8109629	7957242	NM_001136262	ATXN7L3B	-0.588019	4.244203e-11	7.353931e-7	1.634207e-8
46	8109629	7991714			0.587206	4.581571e-11	7.938488e-7	1.725758e-8
47	8109629	8024728	NM_170678	ITGB1BP3	0.586490	4.899815e-11	8.489910e-7	1.806364e-8
48	8109629	7992716	NM_001135086	PRSS41	0.585653	5.299183e-11	9.181895e-7	1.912895e-8
49	8109629	7916422	NM_152268	PARS2	0.584961	5.652451e-11	9.794002e-7	1.998776e-8
50	8109629	8065603	NR_002781	TSPYL3	0.584581	5.856441e-11	1.014746e-6	2.029491e-8

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
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	with keyword:
	KEGG Pathway:
Limit output to	rows.
Remove	"self correlations", i.e. correlations of a variable with itself
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