[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
4442	7916422	NM_152268	PARS2		prolyl-tRNA synthetase 2, mitochondrial (putative)

Fetching correlation data, please wait...
Getting list of correlations for id 4442.
Getting list of p-values for id 4442.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.119 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	7916422	8100782			0.681066	1.302611e-15	2.257034e-11	2.257034e-11
2	7916422	8141166	AK125166	LOC441268	0.627465	7.919409e-13	1.372196e-8	6.860980e-9
3	7916422	7977775	NM_001344	DAD1	-0.626708	8.593809e-13	1.489049e-8	4.963498e-9
4	7916422	8110861	NM_032479	MRPL36	0.609005	5.465368e-12	9.469843e-8	2.367461e-8
5	7916422	8103023	BC035666		0.606373	7.125873e-12	1.234700e-7	2.469400e-8
6	7916422	7954434	ENST00000410223		0.605770	7.569720e-12	1.311605e-7	2.186009e-8
7	7916422	8175537	AK093505	CXorf18	0.605557	7.733321e-12	1.339953e-7	1.914218e-8
8	7916422	8109629	NM_001040442	FABP6	0.584961	5.652451e-11	9.794002e-7	1.224250e-7
9	7916422	7924893	ENST00000436555		0.572333	1.789290e-10	3.100303e-6	3.444782e-7
10	7916422	8032290	NM_003200	TCF3	0.572104	1.826341e-10	3.164501e-6	3.164501e-7
11	7916422	8037853	NM_017854	TMEM160	0.570529	2.101168e-10	3.640693e-6	3.309721e-7
12	7916422	8176159	NM_020994	CTAG2	0.566312	3.047405e-10	5.280239e-6	4.400199e-7
13	7916422	8036004	NM_004364	CEBPA	0.566275	3.057215e-10	5.297237e-6	4.074798e-7
14	7916422	8106769	XR_019029	LOC645181	0.558530	5.969930e-10	1.034410e-5	7.388641e-7
15	7916422	8024864	NM_001001520	HDGFRP2	0.555014	8.044213e-10	1.393821e-5	9.292138e-7
16	7916422	7995342			0.549972	1.226195e-9	2.124629e-5	1.327893e-6
17	7916422	7945652	NM_001012708	KRTAP5-3	0.547314	1.527159e-9	2.646109e-5	1.556535e-6
18	7916422	7901746			0.545337	1.795654e-9	3.111330e-5	1.728516e-6
19	7916422	8129120	NM_001085480	FAM162B	0.544268	1.959159e-9	3.394636e-5	1.786650e-6
20	7916422	7995338			0.540275	2.705844e-9	4.688416e-5	2.344208e-6
21	7916422	8137962	AK125308	LOC100129484	0.540078	2.748857e-9	4.762944e-5	2.268069e-6
22	7916422	8019010	NM_020649	CBX8	0.540026	2.760362e-9	4.782879e-5	2.174036e-6
23	7916422	8032761	NM_030662	MAP2K2	0.539821	2.806296e-9	4.862470e-5	2.114117e-6
24	7916422	7955277	NM_003217	TMBIM6	-0.539687	2.836582e-9	4.914945e-5	2.047894e-6
25	7916422	8052676			0.538768	3.053076e-9	5.290065e-5	2.116026e-6
26	7916422	8148841	NM_024531	GPR172A	0.537630	3.343171e-9	5.792713e-5	2.227966e-6
27	7916422	8064857	ENST00000436669		-0.537528	3.370424e-9	5.839934e-5	2.162939e-6
28	7916422	8127692	NM_000863	HTR1B	0.534335	4.340246e-9	7.520344e-5	2.685837e-6
29	7916422	8035646	NM_023002	HAPLN4	0.531106	5.590543e-9	9.686734e-5	3.340253e-6
30	7916422	8094144	NM_030930	UNC93B1	0.530346	5.930969e-9	1.027659e-4	3.425530e-6
31	7916422	7941501	NM_003860	BANF1	0.530295	5.954735e-9	1.031777e-4	3.328313e-6
32	7916422	7985431	NR_026811	LOC80154	0.528403	6.895383e-9	1.194763e-4	3.733634e-6
33	7916422	8165674	AY423734	SH3KBP1	-0.526737	7.840113e-9	1.358456e-4	4.116534e-6
34	7916422	8164373	NM_012127	CIZ1	0.525730	8.470194e-9	1.467631e-4	4.316560e-6
35	7916422	7943236	NM_002033	FUT4	0.525048	8.924224e-9	1.546300e-4	4.418001e-6
36	7916422	8037166	NM_006494	ERF	0.524488	9.313806e-9	1.613803e-4	4.482786e-6
37	7916422	7920123	NM_002966	S100A10	-0.523173	1.029457e-8	1.783741e-4	4.820921e-6
38	7916422	8150433	NM_152568	NKX6-3	0.521993	1.125843e-8	1.950748e-4	5.133546e-6
39	7916422	8096899	NM_152400	C4orf32	0.521549	1.164321e-8	2.017420e-4	5.172871e-6
40	7916422	7990952	NR_026811	LOC80154	0.521538	1.165280e-8	2.019081e-4	5.047703e-6
41	7916422	8143661			0.521102	1.204355e-8	2.086786e-4	5.089721e-6
42	7916422	8174509	NM_005274	GNG5	-0.520486	1.261587e-8	2.185951e-4	5.204645e-6
43	7916422	8000903	NM_023931	ZNF747	0.517146	1.620341e-8	2.807565e-4	6.529221e-6
44	7916422	8170247	AK093505	CXorf18	0.516035	1.759868e-8	3.049324e-4	6.930282e-6
45	7916422	7939665	NM_001012334	MDK	0.515632	1.813370e-8	3.142025e-4	6.982279e-6
46	7916422	8027032	NM_001100418	C19orf60	0.515357	1.850633e-8	3.206592e-4	6.970852e-6
47	7916422	7992737	NM_138439	FLYWCH2	0.514888	1.915997e-8	3.319849e-4	7.063508e-6
48	7916422	8092514	NM_022149	MAGEF1	0.514532	1.967190e-8	3.408551e-4	7.101148e-6
49	7916422	8118667	ENST00000416347		-0.513599	2.107304e-8	3.651326e-4	7.451685e-6
50	7916422	7998265	AK097604	LOC100130285	0.510127	2.717721e-8	4.708995e-4	9.417990e-6

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
Restrict output to	miRs, Transcription factors? (Empty: No restrictions.)
	with keyword:
	KEGG Pathway:
Limit output to	rows.
Remove	"self correlations", i.e. correlations of a variable with itself
Sort results by	positive, negative or absolute value of correlation