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Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Search Options: Find correlations between...
Gene/Label/Number: and (Empty also means "all others")
Output Options
Restrict output to miRs, Transcription factors? (Empty: No restrictions.)
  with keyword:
 KEGG Pathway:
Limit output to rows.
Remove "self correlations", i.e. correlations of a variable with itself
Sort results by positive, negative or absolute value of correlation
Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id Label1 AccNum GeneSym Info Gene Name
6250 7906777 NM_004001 FCGR2B link to infopage Fc fragment of IgG, low affinity IIb, receptor (CD32)

Fetching correlation data, please wait...
Getting list of correlations for id 6250.
Getting list of p-values for id 6250.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.106 seconds. Transmitting 50 results:

Column legend:

Rank Label1 Label2 AccNum GeneSym Info Pearson r Raw p Bonferroni FDR (BH)
1 7906777 8134098 NM_012395 CDK14 link to infopage 0.488169 1.273970e-7 2.207408e-3 2.207408e-3
2 7906777 7906767 NM_201563 FCGR2C link to infopage 0.451861 1.308014e-6 2.266396e-2 1.133198e-2
3 7906777 7919606 NM_001024599 HIST2H2BF link to infopage 0.406755 1.663810e-5 2.882884e-1 9.609613e-2
4 7906777 7919584 NM_001024599 HIST2H2BF link to infopage 0.399002 2.485700e-5 4.306972e-1 1.076743e-1
5 7906777 8129637 NM_004665 VNN2 link to infopage 0.385568 4.869186e-5 8.436839e-1 1.687368e-1
6 7906777 7909390 NM_175710 CR1L link to infopage 0.378859 6.739452e-5 1.167745e+0 1.946241e-1
7 7906777 8031207 NM_001130917 LILRA2 link to infopage 0.374647 8.235699e-5 1.427000e+0 2.038571e-1
8 7906777 7945962 NM_003141 TRIM21 link to infopage 0.369898 1.029025e-4 1.782991e+0 2.228739e-1
9 7906777 7976216 NM_001102366 C14orf159 link to infopage 0.368600 1.093000e-4 1.893842e+0 2.104268e-1
10 7906777 8107706 NM_005573 LMNB1 link to infopage 0.363827 1.361251e-4 2.358639e+0 2.358639e-1
11 7906777 7962194 NM_001013699 H3F3C link to infopage 0.361510 1.512480e-4 2.620674e+0 2.382431e-1
12 7906777 8092169 NM_003810 TNFSF10 link to infopage 0.358635 1.721740e-4 2.983259e+0 2.486050e-1
13 7906777 7968344 NM_001629 ALOX5AP link to infopage 0.358366 1.742639e-4 3.019470e+0 2.322669e-1
14 7906777 7938012 NM_001003819 TRIM6-TRIM34 link to infopage 0.357981 1.772967e-4 3.072020e+0 2.194300e-1
15 7906777 7922474 NM_014656 KIAA0040 link to infopage 0.357456 1.815046e-4 3.144930e+0 2.096620e-1
16 7906777 7916775 ENST00000331747 link to infopage 0.357264 1.830650e-4 3.171968e+0 1.982480e-1
17 7906777 8118571 NM_002800 PSMB9 link to infopage 0.355636 1.968383e-4 3.410616e+0 2.006245e-1
18 7906777 8179495 NM_002800 PSMB9 link to infopage 0.355636 1.968383e-4 3.410616e+0 1.894787e-1
19 7906777 8178211 NM_002800 PSMB9 link to infopage 0.355636 1.968383e-4 3.410616e+0 1.795061e-1
20 7906777 7922219 NM_000655 SELL link to infopage 0.352268 2.284080e-4 3.957625e+0 1.978812e-1
21 7906777 8166049 NM_001039091 PRPS2 link to infopage 0.351903 2.321020e-4 4.021632e+0 1.915063e-1
22 7906777 8088803 NM_173359 EIF4E3 link to infopage 0.351814 2.330076e-4 4.037322e+0 1.835146e-1
23 7906777 8048898 NM_007237 SP140 link to infopage 0.351683 2.343454e-4 4.060503e+0 1.765436e-1
24 7906777 7971713 NM_024705 DHRS12 link to infopage 0.351111 2.402983e-4 4.163648e+0 1.734853e-1
25 7906777 8048976 ENST00000410320 link to infopage 0.350588 2.458473e-4 4.259797e+0 1.703919e-1
26 7906777 7927233 NM_015262 FAM21C link to infopage 0.349322 2.598006e-4 4.501564e+0 1.731371e-1
27 7906777 7939150 NM_024081 PRRG4 link to infopage 0.348335 2.711801e-4 4.698738e+0 1.740273e-1
28 7906777 7907788 ENST00000410460 link to infopage 0.346765 2.902304e-4 5.028822e+0 1.796008e-1
29 7906777 7993035 NM_016936 UBN1 link to infopage 0.346743 2.905104e-4 5.033673e+0 1.735749e-1
30 7906777 7906757 NM_001136219 FCGR2A link to infopage 0.346301 2.960987e-4 5.130502e+0 1.710167e-1
31 7906777 7975459 NM_015556 SIPA1L1 link to infopage 0.345340 3.085820e-4 5.346800e+0 1.724774e-1
32 7906777 8017843 NM_004694 SLC16A6 link to infopage 0.345063 3.122762e-4 5.410809e+0 1.690878e-1
33 7906777 8097827 uc003ind link to infopage 0.344373 3.216461e-4 5.573162e+0 1.688837e-1
34 7906777 8070961 NM_002340 LSS link to infopage -0.343188 3.383447e-4 5.862498e+0 1.724264e-1
35 7906777 8016847 NM_005082 TRIM25 link to infopage 0.340809 3.742980e-4 6.485461e+0 1.852989e-1
36 7906777 8016980 hsa-mir-142 link to infopage 0.339098 4.022943e-4 6.970554e+0 1.936265e-1
37 7906777 8160346 NM_001010915 PTPLAD2 link to infopage 0.338911 4.054666e-4 7.025519e+0 1.898789e-1
38 7906777 8147221 NM_004337 OSGIN2 link to infopage 0.338582 4.111121e-4 7.123340e+0 1.874563e-1
39 7906777 8126446 NM_001008739 C6orf226 link to infopage -0.337635 4.277531e-4 7.411678e+0 1.900430e-1
40 7906777 7911600 NM_023018 NADK link to infopage 0.337524 4.297416e-4 7.446133e+0 1.861533e-1
41 7906777 7958828 NM_001143906 TRAFD1 link to infopage 0.337204 4.355333e-4 7.546486e+0 1.840606e-1
42 7906777 8129627 NM_078625 VNN3 link to infopage 0.337147 4.365762e-4 7.564555e+0 1.801085e-1
43 7906777 8051387 NM_032574 DPY30 link to infopage 0.337136 4.367692e-4 7.567899e+0 1.759977e-1
44 7906777 7927323 NM_018232 FAM21B link to infopage 0.336570 4.472026e-4 7.748679e+0 1.761063e-1
45 7906777 7935746 NM_001001342 BLOC1S2 link to infopage 0.336155 4.550025e-4 7.883828e+0 1.751962e-1
46 7906777 8140840 NM_024636 STEAP4 link to infopage 0.335319 4.710958e-4 8.162676e+0 1.774495e-1
47 7906777 8008885 hsa-mir-21 link to infopage 0.333208 5.140836e-4 8.907526e+0 1.895218e-1
48 7906777 7920531 NM_001111 ADAR link to infopage 0.333140 5.155332e-4 8.932644e+0 1.860967e-1
49 7906777 7918359 NM_020703 AMIGO1 link to infopage -0.332525 5.287422e-4 9.161517e+0 1.869697e-1
50 7906777 8115978 NM_016290 UIMC1 link to infopage 0.331491 5.516933e-4 9.559190e+0 1.911838e-1

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

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