[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
4233	8147785	NM_015420	DCAF13		DDB1 and CUL4 associated factor 13

Fetching correlation data, please wait...
Getting list of correlations for id 4233.
Getting list of p-values for id 4233.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.125 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8147785	8059770	NM_145702	TIGD1	0.554714	8.250030e-10	1.429483e-5	1.429483e-5
2	8147785	8030368	NM_001015	RPS11	0.538048	3.233779e-9	5.603170e-5	2.801585e-5
3	8147785	8169683	NM_006777	ZBTB33	0.532728	4.924777e-9	8.533161e-5	2.844387e-5
4	8147785	8160016	NM_012416	RANBP6	0.532360	5.068784e-9	8.782683e-5	2.195671e-5
5	8147785	8162880	NM_019051	MRPL50	0.527834	7.205205e-9	1.248446e-4	2.496892e-5
6	8147785	8121704	NM_138459	NUS1	0.520150	1.293924e-8	2.241981e-4	3.736636e-5
7	8147785	8027566	NM_001806	CEBPG	0.505815	3.713031e-8	6.433568e-4	9.190811e-5
8	8147785	7965471	NM_003348	UBE2N	0.503479	4.388849e-8	7.604559e-4	9.505699e-5
9	8147785	8089867	NM_173825	RABL3	0.502763	4.618473e-8	8.002428e-4	8.891587e-5
10	8147785	8160033	NM_003094	SNRPE	0.500708	5.343234e-8	9.258221e-4	9.258221e-5
11	8147785	8026007	NM_153358	ZNF791	0.499759	5.713452e-8	9.899699e-4	8.999726e-5
12	8147785	7935002	NM_003133	SRP9	0.498841	6.094690e-8	1.056027e-3	8.800224e-5
13	8147785	7985089	NM_002902	RCN2	0.498040	6.447089e-8	1.117087e-3	8.592978e-5
14	8147785	8160478	BC071953	C9orf82	0.497305	6.787535e-8	1.176076e-3	8.400544e-5
15	8147785	7973840	NM_001030055	ARHGAP5	0.497081	6.894551e-8	1.194619e-3	7.964126e-5
16	8147785	7943580	NM_003478	CUL5	0.492698	9.345318e-8	1.619263e-3	1.012039e-4
17	8147785	7947221	NM_018362	LIN7C	0.492455	9.502914e-8	1.646570e-3	9.685705e-5
18	8147785	8092265	NM_020409	MRPL47	0.492308	9.599516e-8	1.663308e-3	9.240601e-5
19	8147785	8111974	NM_006451	PAIP1	0.488791	1.221213e-7	2.115996e-3	1.113682e-4
20	8147785	8008530	NM_016001	UTP18	0.488387	1.255245e-7	2.174963e-3	1.087481e-4
21	8147785	8046848	NM_018471	ZC3H15	0.487808	1.305585e-7	2.262187e-3	1.077232e-4
22	8147785	7979565	NM_080666	WDR89	0.487682	1.316764e-7	2.281556e-3	1.037071e-4
23	8147785	8022110	NM_001143823	ZFP161	0.483553	1.739033e-7	3.013222e-3	1.310097e-4
24	8147785	7961075	NM_001781	CD69	0.482653	1.846827e-7	3.199997e-3	1.333332e-4
25	8147785	8116929	NM_002948	RPL15	0.482323	1.887921e-7	3.271200e-3	1.308480e-4
26	8147785	8160405	NM_018847	KLHL9	0.482195	1.904149e-7	3.299320e-3	1.268969e-4
27	8147785	8079170	NM_173826	C3orf23	0.482122	1.913471e-7	3.315471e-3	1.227952e-4
28	8147785	7992887	AK093979	ZNF75A	0.481888	1.943429e-7	3.367379e-3	1.202635e-4
29	8147785	8171747	NM_001412	EIF1AX	0.481439	2.002335e-7	3.469447e-3	1.196361e-4
30	8147785	8135688	NM_016200	NAA38	0.480023	2.199521e-7	3.811110e-3	1.270370e-4
31	8147785	8038993	NM_006969	ZNF28	0.479975	2.206583e-7	3.823346e-3	1.233337e-4
32	8147785	7971184	NM_005830	MRPS31	0.478876	2.372751e-7	4.111265e-3	1.284770e-4
33	8147785	7927288	NM_019054	FAM35A	0.477212	2.647061e-7	4.586562e-3	1.389867e-4
34	8147785	7959623	NM_001516	GTF2H3	0.475804	2.902695e-7	5.029499e-3	1.479265e-4
35	8147785	7921667	NM_001778	CD48	0.474566	3.146484e-7	5.451914e-3	1.557690e-4
36	8147785	7968670	NM_016617	UFM1	0.473010	3.480781e-7	6.031150e-3	1.675319e-4
37	8147785	8081277	NM_020202	NIT2	0.472838	3.519731e-7	6.098638e-3	1.648281e-4
38	8147785	7946635	NM_021211	ZBED5	0.471587	3.815742e-7	6.611536e-3	1.739878e-4
39	8147785	7917088	NM_005482	PIGK	0.470989	3.965456e-7	6.870946e-3	1.761781e-4
40	8147785	8023735	NM_019022	TMX3	0.470857	3.999224e-7	6.929455e-3	1.732364e-4
41	8147785	8029399	NM_001146220	ZNF226	0.470555	4.077556e-7	7.065181e-3	1.723215e-4
42	8147785	7910099	NM_001130440	SRP9	0.470495	4.093411e-7	7.092653e-3	1.688727e-4
43	8147785	8150266	NM_014462	LSM1	0.470116	4.194027e-7	7.266991e-3	1.689998e-4
44	8147785	8157021	NM_015469	NIPSNAP3A	0.470051	4.211654e-7	7.297534e-3	1.658530e-4
45	8147785	7923119	NM_194314	ZBTB41	0.469344	4.406655e-7	7.635411e-3	1.696758e-4
46	8147785	8112337	NM_173829	SFRS12IP1	0.468796	4.563878e-7	7.907831e-3	1.719094e-4
47	8147785	8130032	NM_032145	FBXO30	0.467958	4.814509e-7	8.342100e-3	1.774915e-4
48	8147785	8020323	NM_003799	RNMT	0.466706	5.213290e-7	9.033067e-3	1.881889e-4
49	8147785	7908178	NM_017673	C1orf26	0.466317	5.343420e-7	9.258543e-3	1.889499e-4
50	8147785	8147994	NM_032334	UTP23	0.466060	5.431019e-7	9.410327e-3	1.882065e-4

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
Restrict output to	miRs, Transcription factors? (Empty: No restrictions.)
	with keyword:
	KEGG Pathway:
Limit output to	rows.
Remove	"self correlations", i.e. correlations of a variable with itself
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