[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
4102	8081277	NM_020202	NIT2		nitrilase family, member 2

Fetching correlation data, please wait...
Getting list of correlations for id 4102.
Getting list of p-values for id 4102.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.134 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8081277	8023165	NM_032124	HDHD2	0.717671	7.048119e-18	1.221228e-13	1.221228e-13
2	8081277	8022110	NM_001143823	ZFP161	0.705169	4.583011e-17	7.940984e-13	3.970492e-13
3	8081277	8098985	NM_024511	HAUS3	0.704339	5.171293e-17	8.960300e-13	2.986767e-13
4	8081277	7943580	NM_003478	CUL5	0.700805	8.611144e-17	1.492053e-12	3.730132e-13
5	8081277	8020930	NM_018255	ELP2	0.699035	1.108552e-16	1.920788e-12	3.841577e-13
6	8081277	8030368	NM_001015	RPS11	0.698340	1.223435e-16	2.119846e-12	3.533077e-13
7	8081277	8089954	NM_001023570	IQCB1	0.697079	1.462273e-16	2.533680e-12	3.619542e-13
8	8081277	7970569	NM_014363	SACS	0.695424	1.845291e-16	3.197335e-12	3.996669e-13
9	8081277	8092328	NM_020166	MCCC1	0.690591	3.607791e-16	6.251219e-12	6.945799e-13
10	8081277	8116534	NM_032765	TRIM52	0.690288	3.761228e-16	6.517080e-12	6.517080e-13
11	8081277	8117194	NM_020662	MRS2	0.690287	3.761830e-16	6.518123e-12	5.925566e-13
12	8081277	8162850	NM_017746	TEX10	0.689342	4.281424e-16	7.418423e-12	6.182019e-13
13	8081277	8027416	NM_003796	C19orf2	0.687792	5.288172e-16	9.162815e-12	7.048320e-13
14	8081277	8119080	NM_003017	SRSF3	0.687630	5.406021e-16	9.367013e-12	6.690724e-13
15	8081277	7925364	NM_018072	HEATR1	0.686380	6.402983e-16	1.109445e-11	7.396299e-13
16	8081277	7981919	NM_022807	SNRPN	0.686341	6.436808e-16	1.115306e-11	6.970661e-13
17	8081277	8090715	NM_032169	ACAD11	0.686021	6.720825e-16	1.164517e-11	6.850102e-13
18	8081277	8131479	NM_019005	MIOS	0.685290	7.416116e-16	1.284990e-11	7.138836e-13
19	8081277	8039947	NM_006625	SRSF10	0.682984	1.009788e-15	1.749660e-11	9.208738e-13
20	8081277	8046848	NM_018471	ZC3H15	0.682854	1.027499e-15	1.780348e-11	8.901740e-13
21	8081277	7901915	NM_013339	ALG6	0.680717	1.364220e-15	2.363783e-11	1.125611e-12
22	8081277	8136631	NM_003143	SSBP1	0.680222	1.456116e-15	2.523012e-11	1.146824e-12
23	8081277	8147156	NM_007013	WWP1	0.680135	1.473032e-15	2.552322e-11	1.109705e-12
24	8081277	7995421	NM_031490	LONP2	0.679699	1.560034e-15	2.703070e-11	1.126279e-12
25	8081277	8017150	NM_016261	TUBD1	0.679377	1.627402e-15	2.819799e-11	1.127920e-12
26	8081277	7968898	BC039586	KIAA1704	0.679213	1.662931e-15	2.881361e-11	1.108216e-12
27	8081277	8041149	NM_015131	WDR43	0.678416	1.845921e-15	3.198428e-11	1.184603e-12
28	8081277	8050367	NM_015909	NBAS	0.677779	2.006424e-15	3.476531e-11	1.241618e-12
29	8081277	7929116	NM_006413	RPP30	0.677171	2.171961e-15	3.763356e-11	1.297709e-12
30	8081277	8140730	NM_024315	C7orf23	0.676796	2.280467e-15	3.951366e-11	1.317122e-12
31	8081277	7915995	NM_007051	FAF1	0.674583	3.037360e-15	5.262835e-11	1.697689e-12
32	8081277	7967386	NM_022782	MPHOSPH9	0.674252	3.169482e-15	5.491761e-11	1.716175e-12
33	8081277	8102730	NM_152778	MFSD8	0.674103	3.231120e-15	5.598562e-11	1.696534e-12
34	8081277	7902382	NM_004582	RABGGTB	0.673883	3.323573e-15	5.758756e-11	1.693752e-12
35	8081277	8043251	NM_017952	PTCD3	0.672812	3.813216e-15	6.607159e-11	1.887760e-12
36	8081277	8008530	NM_016001	UTP18	0.671308	4.620394e-15	8.005757e-11	2.223821e-12
37	8081277	7913712	NM_006625	SRSF10	0.670947	4.837407e-15	8.381775e-11	2.265344e-12
38	8081277	8018600	NM_014230	SRP68	0.670610	5.049416e-15	8.749123e-11	2.302401e-12
39	8081277	8121734	NM_014034	ASF1A	0.669754	5.627791e-15	9.751273e-11	2.500326e-12
40	8081277	8057554	NM_014412	CACYBP	0.667913	7.098480e-15	1.229954e-10	3.074884e-12
41	8081277	8056766	NM_003705	SLC25A12	0.667876	7.131137e-15	1.235612e-10	3.013688e-12
42	8081277	8022009	NM_022840	METTL4	0.667788	7.211035e-15	1.249456e-10	2.974895e-12
43	8081277	8055060	NM_018383	WDR33	0.667554	7.425383e-15	1.286596e-10	2.992084e-12
44	8081277	8084045	NM_033540	MFN1	0.665735	9.322098e-15	1.615240e-10	3.671000e-12
45	8081277	8154316	NM_152896	UHRF2	0.664367	1.104936e-14	1.914523e-10	4.254495e-12
46	8081277	7969935	NM_000123	ERCC5	0.664296	1.114716e-14	1.931468e-10	4.198843e-12
47	8081277	8141133	NM_006304	SHFM1	0.663737	1.194464e-14	2.069647e-10	4.403504e-12
48	8081277	7925130	NM_005646	TARBP1	0.663637	1.209431e-14	2.095581e-10	4.365794e-12
49	8081277	8114861	NM_020117	LARS	0.663071	1.296894e-14	2.247128e-10	4.585975e-12
50	8081277	8122409	NM_003630	PEX3	0.663035	1.302688e-14	2.257167e-10	4.514335e-12

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
Restrict output to	miRs, Transcription factors? (Empty: No restrictions.)
	with keyword:
	KEGG Pathway:
Limit output to	rows.
Remove	"self correlations", i.e. correlations of a variable with itself
Sort results by	positive, negative or absolute value of correlation