[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
901	7917088	NM_005482	PIGK		phosphatidylinositol glycan anchor biosynthesis, class K

Fetching correlation data, please wait...
Getting list of correlations for id 901.
Getting list of p-values for id 901.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.128 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	7917088	7947221	NM_018362	LIN7C	0.800224	1.307050e-24	2.264725e-20	2.264725e-20
2	7917088	8078270	NM_002948	RPL15	0.799220	1.646106e-24	2.852208e-20	1.426104e-20
3	7917088	8023735	NM_019022	TMX3	0.790868	1.067517e-23	1.849687e-19	6.165625e-20
4	7917088	7901895	NM_032852	ATG4C	0.788674	1.720054e-23	2.980338e-19	7.450845e-20
5	7917088	8036813	NM_001005851	ZNF780B	0.787062	2.433040e-23	4.215728e-19	8.431457e-20
6	7917088	7989159	NM_017661	ZNF280D	0.786502	2.742888e-23	4.752602e-19	7.921004e-20
7	7917088	7957540	NM_014050	MRPL42	0.786443	2.777894e-23	4.813258e-19	6.876082e-20
8	7917088	8171747	NM_001412	EIF1AX	0.783216	5.500822e-23	9.531275e-19	1.191409e-19
9	7917088	7902634	NM_025065	RPF1	0.782841	5.951054e-23	1.031139e-18	1.145710e-19
10	7917088	8088219	NM_001112736	C3orf63	0.782367	6.571811e-23	1.138698e-18	1.138698e-19
11	7917088	7970569	NM_014363	SACS	0.782358	6.583326e-23	1.140693e-18	1.036994e-19
12	7917088	8047174	NM_001127257	SLC39A10	0.781464	7.931789e-23	1.374341e-18	1.145284e-19
13	7917088	7943297	NM_014679	CEP57	0.781425	7.997076e-23	1.385653e-18	1.065887e-19
14	7917088	8047815	NM_001136194	FASTKD2	0.780479	9.730165e-23	1.685946e-18	1.204247e-19
15	7917088	8069532	NM_006948	HSPA13	0.780141	1.043626e-22	1.808290e-18	1.205527e-19
16	7917088	8152465	NM_003756	EIF3H	0.779523	1.185415e-22	2.053968e-18	1.283730e-19
17	7917088	7917604	NM_201269	ZNF644	0.777570	1.768389e-22	3.064088e-18	1.802405e-19
18	7917088	7901418	NM_152265	BTF3L4	0.777542	1.778703e-22	3.081959e-18	1.712200e-19
19	7917088	7974566	NM_018229	MUDENG	0.776641	2.136225e-22	3.701437e-18	1.948125e-19
20	7917088	7988605	NM_004236	COPS2	0.775049	2.946104e-22	5.104714e-18	2.552357e-19
21	7917088	7923119	NM_194314	ZBTB41	0.774776	3.112398e-22	5.392852e-18	2.568025e-19
22	7917088	8135688	NM_016200	NAA38	0.771044	6.541113e-22	1.133379e-17	5.151721e-19
23	7917088	7986765	NM_000969	RPL5	0.771041	6.544828e-22	1.134022e-17	4.930532e-19
24	7917088	7989885	NM_001031723	DNAJB14	0.770939	6.677652e-22	1.157037e-17	4.820987e-19
25	7917088	8055645	NM_002552	ORC4L	0.770248	7.650084e-22	1.325530e-17	5.302120e-19
26	7917088	7950544	NM_004705	PRKRIR	0.770127	7.833357e-22	1.357286e-17	5.220330e-19
27	7917088	8022473	NM_052911	ESCO1	0.769975	8.071115e-22	1.398482e-17	5.179563e-19
28	7917088	7938448	NM_017944	USP47	0.769835	8.295656e-22	1.437388e-17	5.133530e-19
29	7917088	7901867	NM_003368	USP1	0.769361	9.102207e-22	1.577139e-17	5.438412e-19
30	7917088	7921987	NM_019026	TMCO1	0.769346	9.128505e-22	1.581696e-17	5.272320e-19
31	7917088	7962013	NM_016570	ERGIC2	0.768651	1.045293e-21	1.811179e-17	5.842513e-19
32	7917088	7923007	NM_015984	UCHL5	0.767148	1.399432e-21	2.424796e-17	7.577489e-19
33	7917088	8162696	NR_027302	XPA	0.763865	2.625732e-21	4.549606e-17	1.378668e-18
34	7917088	8027416	NM_003796	C19orf2	0.762965	3.114573e-21	5.396621e-17	1.587241e-18
35	7917088	7903010	NM_000969	RPL5	0.762580	3.350417e-21	5.805267e-17	1.658648e-18
36	7917088	7969228	NM_001004127	ALG11	0.761958	3.767471e-21	6.527897e-17	1.813305e-18
37	7917088	7929562	NM_014803	ZNF518A	0.761565	4.056348e-21	7.028433e-17	1.899577e-18
38	7917088	7917103	NM_015534	ZZZ3	0.761466	4.132537e-21	7.160447e-17	1.884328e-18
39	7917088	7972180	NM_024546	RNF219	0.760604	4.858108e-21	8.417644e-17	2.158370e-18
40	7917088	7913712	NM_006625	SRSF10	0.760504	4.949365e-21	8.575765e-17	2.143941e-18
41	7917088	7975224	NM_004094	EIF2S1	0.758447	7.258735e-21	1.257721e-16	3.067612e-18
42	7917088	7946635	NM_021211	ZBED5	0.758045	7.819094e-21	1.354814e-16	3.225749e-18
43	7917088	8020898	NR_024565	ZNF271	0.757222	9.099791e-21	1.576721e-16	3.666793e-18
44	7917088	8121161	NM_015323	KIAA0776	0.757003	9.474747e-21	1.641689e-16	3.731112e-18
45	7917088	8093336	NM_003441	ZNF141	0.756826	9.788709e-21	1.696090e-16	3.769088e-18
46	7917088	7943580	NM_003478	CUL5	0.756819	9.800472e-21	1.698128e-16	3.691582e-18
47	7917088	8151561	NM_024699	ZFAND1	0.756711	9.997088e-21	1.732195e-16	3.685522e-18
48	7917088	8162449	NM_031486	ZNF484	0.756629	1.014834e-20	1.758403e-16	3.663339e-18
49	7917088	7902594	NM_182948	PRKACB	0.756590	1.022260e-20	1.771270e-16	3.614837e-18
50	7917088	7973840	NM_001030055	ARHGAP5	0.756292	1.079494e-20	1.870439e-16	3.740879e-18

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
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