[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
6722	8021047	NM_015559	SETBP1		SET binding protein 1

Fetching correlation data, please wait...
Getting list of correlations for id 6722.
Getting list of p-values for id 6722.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.099 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8021047	7991668			0.473343	3.406441e-7	5.902340e-3	5.902340e-3
2	8021047	8009844	NM_001031803	LLGL2	0.466476	5.289867e-7	9.165753e-3	4.582876e-3
3	8021047	8028286	NM_015073	SIPA1L3	0.450989	1.378757e-6	2.388972e-2	7.963240e-3
4	8021047	7981874	NM_001012423	GOLGA8E	0.446809	1.771443e-6	3.069379e-2	7.673447e-3
5	8021047	7996064	NM_153837	GPR114	0.444355	2.049027e-6	3.550350e-2	7.100700e-3
6	8021047	8112961	NM_001025	RPS23	-0.440735	2.534670e-6	4.391823e-2	7.319705e-3
7	8021047	7982131	NM_001012420	GOLGA8G	0.440734	2.534949e-6	4.392305e-2	6.274722e-3
8	8021047	7986922	NM_001012420	GOLGA8G	0.440734	2.534949e-6	4.392305e-2	5.490382e-3
9	8021047	8085118	ENST00000410585		0.436523	3.236480e-6	5.607850e-2	6.230944e-3
10	8021047	7991695	NR_027407	GOLGA8DP	0.430919	4.457941e-6	7.724275e-2	7.724275e-3
11	8021047	7981752	NR_027407	GOLGA8DP	0.430830	4.480492e-6	7.763348e-2	7.057589e-3
12	8021047	8041447	NM_016441	CRIM1	0.427391	5.437668e-6	9.421848e-2	7.851540e-3
13	8021047	7993195	NM_000246	CIITA	0.426639	5.671355e-6	9.826756e-2	7.559043e-3
14	8021047	8005865	NM_015077	SARM1	0.424011	6.563952e-6	1.137336e-1	8.123829e-3
15	8021047	8070853	NR_027129	C21orf67	0.423836	6.627772e-6	1.148394e-1	7.655960e-3
16	8021047	8119801	NM_033450	ABCC10	0.423281	6.834704e-6	1.184249e-1	7.401557e-3
17	8021047	8042040	NM_001039753	EML6	0.421873	7.386190e-6	1.279805e-1	7.528266e-3
18	8021047	8032751	AY358211		0.419961	8.203314e-6	1.421388e-1	7.896601e-3
19	8021047	7931455	NM_001143757	LRRC27	0.415615	1.038684e-5	1.799727e-1	9.472249e-3
20	8021047	8078690	NM_007335	DLEC1	0.413324	1.174740e-5	2.035472e-1	1.017736e-2
21	8021047	8073842	NM_017931	TTC38	0.411872	1.269519e-5	2.199696e-1	1.047474e-2
22	8021047	7999591	NR_023387	ABCC6P2	0.409561	1.435212e-5	2.486792e-1	1.130360e-2
23	8021047	7908993	NM_005686	SOX13	0.408959	1.481657e-5	2.567267e-1	1.116203e-2
24	8021047	8072817	NM_152243	CDC42EP1	0.407319	1.615248e-5	2.798741e-1	1.166142e-2
25	8021047	7998921	NM_032805	ZSCAN10	0.405905	1.739552e-5	3.014121e-1	1.205648e-2
26	8021047	8003484	NM_004913	C16orf7	0.404833	1.839648e-5	3.187558e-1	1.225984e-2
27	8021047	8153937	NM_031309	SCRT1	0.404315	1.889892e-5	3.274616e-1	1.212821e-2
28	8021047	8010918	NM_001128159	VPS53	0.404243	1.896966e-5	3.286872e-1	1.173883e-2
29	8021047	8135488	NM_001099660	LRRN3	-0.404123	1.908875e-5	3.307509e-1	1.140520e-2
30	8021047	8065693	NM_031232	NECAB3	0.404121	1.909046e-5	3.307804e-1	1.102601e-2
31	8021047	7987536	NM_018145	FAM82A2	0.402463	2.080413e-5	3.604732e-1	1.162817e-2
32	8021047	8158250	NM_016174	CERCAM	0.398989	2.487396e-5	4.309912e-1	1.346847e-2
33	8021047	8170622	NM_013364	PNMA3	0.397255	2.717409e-5	4.708455e-1	1.426805e-2
34	8021047	8125780	NM_054111	IP6K3	0.397244	2.718916e-5	4.711066e-1	1.385608e-2
35	8021047	8038804	NM_152353	CLDND2	0.396402	2.837605e-5	4.916719e-1	1.404777e-2
36	8021047	7959574	NM_020382	SETD8	0.396344	2.845984e-5	4.931237e-1	1.369788e-2
37	8021047	8013919	NM_198147	ABHD15	0.395956	2.902494e-5	5.029152e-1	1.359230e-2
38	8021047	8032224	NM_152482	C19orf25	0.394763	3.082995e-5	5.341906e-1	1.405765e-2
39	8021047	7898805	NM_000491	C1QB	0.394050	3.195738e-5	5.537256e-1	1.419809e-2
40	8021047	7941608	ENST00000364863		0.393555	3.276336e-5	5.676907e-1	1.419227e-2
41	8021047	8024829	NM_032868	MPND	0.393056	3.359454e-5	5.820925e-1	1.419738e-2
42	8021047	8157324	NM_144488	RGS3	0.390376	3.840679e-5	6.654744e-1	1.584463e-2
43	8021047	8033674	NM_024690	MUC16	0.390251	3.864606e-5	6.696203e-1	1.557257e-2
44	8021047	8028656	NM_022835	PLEKHG2	0.389773	3.957538e-5	6.857227e-1	1.558461e-2
45	8021047	8011375	NM_080704	TRPV1	0.389318	4.047838e-5	7.013689e-1	1.558597e-2
46	8021047	7937474	AF435951	NS3BP	0.388737	4.165950e-5	7.218341e-1	1.569205e-2
47	8021047	7950471	NM_001005285	OR2AT4	0.388407	4.234600e-5	7.337291e-1	1.561126e-2
48	8021047	8160816	NM_198573	ENHO	0.387562	4.414795e-5	7.649515e-1	1.593649e-2
49	8021047	8028309	ENST00000459181		0.387085	4.519928e-5	7.831679e-1	1.598302e-2
50	8021047	7986642	NR_027407	GOLGA8DP	0.386726	4.600385e-5	7.971087e-1	1.594217e-2

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
Restrict output to	miRs, Transcription factors? (Empty: No restrictions.)
	with keyword:
	KEGG Pathway:
Limit output to	rows.
Remove	"self correlations", i.e. correlations of a variable with itself
Sort results by	positive, negative or absolute value of correlation