[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
1351	7908993	NM_005686	SOX13		SRY (sex determining region Y)-box 13

Fetching correlation data, please wait...
Getting list of correlations for id 1351.
Getting list of p-values for id 1351.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.149 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	7908993	7972567	NM_033132	ZIC5	0.645549	1.049767e-13	1.818931e-9	1.818931e-9
2	7908993	8070925	ENST00000455651		0.636179	3.041018e-13	5.269172e-9	2.634586e-9
3	7908993	7914433	NM_001703	BAI2	0.634369	3.719132e-13	6.444140e-9	2.148047e-9
4	7908993	8087691	NM_001005505	CACNA2D2	0.630455	5.721692e-13	9.913975e-9	2.478494e-9
5	7908993	8131539	NM_018374	TMEM106B	-0.624203	1.124503e-12	1.948427e-8	3.896853e-9
6	7908993	8059319	NM_005687	FARSB	-0.623306	1.237427e-12	2.144091e-8	3.573484e-9
7	7908993	7898556	NM_001040125	PQLC2	0.619138	1.922604e-12	3.331296e-8	4.758995e-9
8	7908993	7952893	BC024764	IQSEC3	0.615821	2.717898e-12	4.709301e-8	5.886626e-9
9	7908993	8046380	NM_000210	ITGA6	-0.615574	2.788310e-12	4.831305e-8	5.368117e-9
10	7908993	8003425	NM_005187	CBFA2T3	0.613764	3.361468e-12	5.824416e-8	5.824416e-9
11	7908993	7942769	AL834516	DKFZp434E1119	0.608672	5.652546e-12	9.794167e-8	8.903788e-9
12	7908993	8041149	NM_015131	WDR43	-0.607428	6.408851e-12	1.110462e-7	9.253847e-9
13	7908993	8019136	BC064483	C17orf56	0.606969	6.711620e-12	1.162922e-7	8.945557e-9
14	7908993	7945712	NM_199292	TH	0.606611	6.957932e-12	1.205601e-7	8.611435e-9
15	7908993	8039378	NM_003180	SYT5	0.605757	7.579672e-12	1.313330e-7	8.755531e-9
16	7908993	7911383	NM_017891	C1orf159	0.605042	8.141950e-12	1.410756e-7	8.817223e-9
17	7908993	8112139	NM_002184	IL6ST	-0.603961	9.067918e-12	1.571198e-7	9.242342e-9
18	7908993	7957540	NM_014050	MRPL42	-0.603271	9.712094e-12	1.682814e-7	9.348969e-9
19	7908993	7951859	NM_000482	APOA4	0.602562	1.041854e-11	1.805221e-7	9.501161e-9
20	7908993	8107307	NM_001744	CAMK4	-0.601843	1.118625e-11	1.938242e-7	9.691208e-9
21	7908993	7961693	NM_002300	LDHB	-0.601534	1.153316e-11	1.998350e-7	9.515952e-9
22	7908993	8132978	ENST00000447142		0.601043	1.210543e-11	2.097507e-7	9.534124e-9
23	7908993	8026900	NM_002248	KCNN1	0.600013	1.339508e-11	2.320965e-7	1.009115e-8
24	7908993	8067820	BC024764	IQSEC3	0.599751	1.374477e-11	2.381556e-7	9.923151e-9
25	7908993	7945550	NM_018494	LRDD	0.599734	1.376668e-11	2.385353e-7	9.541413e-9
26	7908993	8037788	NM_145056	DACT3	0.599405	1.421808e-11	2.463566e-7	9.475253e-9
27	7908993	7992954	AK098732	TRAP1	0.598775	1.512226e-11	2.620233e-7	9.704567e-9
28	7908993	8029624	ENST00000421905		0.598530	1.548838e-11	2.683672e-7	9.584543e-9
29	7908993	8161255	NM_003028	SHB	0.598124	1.611516e-11	2.792273e-7	9.628529e-9
30	7908993	8009951	NM_000213	ITGB4	0.597443	1.721910e-11	2.983554e-7	9.945181e-9
31	7908993	8108822	NM_173828	RELL2	0.597082	1.783448e-11	3.090180e-7	9.968323e-9
32	7908993	8137783	NM_001097620	TMEM184A	0.596781	1.836347e-11	3.181839e-7	9.943247e-9
33	7908993	7912004	NM_207370	GPR153	0.596041	1.973023e-11	3.418657e-7	1.035957e-8
34	7908993	8037103	NM_002088	GRIK5	0.594378	2.316503e-11	4.013804e-7	1.180531e-8
35	7908993	7897006	NM_006983	MMP23B	0.593921	2.420605e-11	4.194183e-7	1.198338e-8
36	7908993	8035539	NM_001492	GDF1	0.593904	2.424491e-11	4.200915e-7	1.166921e-8
37	7908993	7920928	NM_024897	PAQR6	0.593313	2.566186e-11	4.446431e-7	1.201738e-8
38	7908993	8056222	NM_001935	DPP4	-0.593312	2.566379e-11	4.446765e-7	1.170201e-8
39	7908993	7977888	NM_022478	CDH24	0.592130	2.873787e-11	4.979410e-7	1.276772e-8
40	7908993	7934141	NM_022146	NPFFR1	0.591280	3.116542e-11	5.400032e-7	1.350008e-8
41	7908993	8037563	NM_006663	PPP1R13L	0.590375	3.396582e-11	5.885257e-7	1.435429e-8
42	7908993	8086222	NM_001099404	SCN5A	0.589170	3.807418e-11	6.597113e-7	1.570741e-8
43	7908993	8125072	NM_025258	C6orf27	0.589155	3.812787e-11	6.606417e-7	1.536376e-8
44	7908993	8015554	NM_012285	KCNH4	0.589134	3.820570e-11	6.619902e-7	1.504523e-8
45	7908993	8069148	NM_198695	KRTAP10-8	0.586973	4.683099e-11	8.114406e-7	1.803201e-8
46	7908993	8051882	NM_133259	LRPPRC	-0.586137	5.064591e-11	8.775416e-7	1.907699e-8
47	7908993	8128620	NM_001080450	BEND3	0.585673	5.289460e-11	9.165048e-7	1.950010e-8
48	7908993	8156415	NM_006648	WNK2	0.585254	5.500373e-11	9.530497e-7	1.985520e-8
49	7908993	8112409	NM_019072	SGTB	-0.585041	5.610718e-11	9.721691e-7	1.984019e-8
50	7908993	8159549	NM_004479	FUT7	0.584778	5.749785e-11	9.962652e-7	1.992530e-8

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
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	KEGG Pathway:
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Remove	"self correlations", i.e. correlations of a variable with itself
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