[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
1484	8114300	NM_017415	KLHL3		kelch-like 3 (Drosophila)

Fetching correlation data, please wait...
Getting list of correlations for id 1484.
Getting list of p-values for id 1484.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.101 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8114300	7936463	NM_002313	ABLIM1	0.611056	4.436973e-12	7.687944e-8	7.687944e-8
2	8114300	8088458	NM_002012	FHIT	0.599220	1.447840e-11	2.508672e-7	1.254336e-7
3	8114300	8136727			0.592505	2.772586e-11	4.804059e-7	1.601353e-7
4	8114300	8015031	NM_001838	CCR7	0.586244	5.014370e-11	8.688399e-7	2.172100e-7
5	8114300	8078173	NM_138381	OXNAD1	0.579926	9.002392e-11	1.559844e-6	3.119689e-7
6	8114300	8106660	NM_006909	RASGRF2	0.576261	1.256889e-10	2.177812e-6	3.629686e-7
7	8114300	7963851	NM_001098815	KIAA0748	0.574948	1.415162e-10	2.452051e-6	3.502929e-7
8	8114300	8085716	NM_002971	SATB1	0.568561	2.500869e-10	4.333255e-6	5.416569e-7
9	8114300	8057056	NM_133378	TTN	0.548789	1.352404e-9	2.343310e-5	2.603677e-6
10	8114300	8169263	NM_182607	VSIG1	0.548287	1.409541e-9	2.442312e-5	2.442312e-6
11	8114300	8104901	NM_002185	IL7R	0.546646	1.613239e-9	2.795259e-5	2.541144e-6
12	8114300	8111136	NM_001034850	FAM134B	0.539421	2.897579e-9	5.020635e-5	4.183862e-6
13	8114300	8053379	AK296608	C2orf89	0.537611	3.348230e-9	5.801478e-5	4.462676e-6
14	8114300	7960896	NM_001040071	LOC650293	0.534207	4.384482e-9	7.596992e-5	5.426423e-6
15	8114300	8088468	AF134979	NPCDR1	0.534114	4.416695e-9	7.652808e-5	5.101872e-6
16	8114300	8047677	NM_006139	CD28	0.532856	4.875618e-9	8.447983e-5	5.279989e-6
17	8114300	8102232	NM_016269	LEF1	0.532809	4.893349e-9	8.478706e-5	4.987474e-6
18	8114300	7898939	NM_020448	NIPAL3	0.532508	5.010060e-9	8.680931e-5	4.822740e-6
19	8114300	8108050	NM_003202	TCF7	0.523197	1.027606e-8	1.780533e-4	9.371228e-6
20	8114300	8166355	NM_014927	CNKSR2	0.521510	1.167770e-8	2.023395e-4	1.011697e-5
21	8114300	8173513	NM_001007	RPS4X	0.518244	1.492769e-8	2.586520e-4	1.231676e-5
22	8114300	8077116	NM_001014440	ODF3B	-0.517835	1.539074e-8	2.666754e-4	1.212161e-5
23	8114300	8107307	NM_001744	CAMK4	0.512914	2.216336e-8	3.840246e-4	1.669672e-5
24	8114300	8155169	NM_021111	RECK	0.511040	2.542591e-8	4.405547e-4	1.835645e-5
25	8114300	7973298	X58769	TRAV8-3	0.510226	2.698216e-8	4.675199e-4	1.870080e-5
26	8114300	7901804	NM_176877	INADL	0.509952	2.752682e-8	4.769571e-4	1.834451e-5
27	8114300	7972487	NM_015296	DOCK9	0.506496	3.535325e-8	6.125657e-4	2.268762e-5
28	8114300	8112865	NM_178276	SERINC5	0.506418	3.555273e-8	6.160222e-4	2.200079e-5
29	8114300	7952601	NM_001143820	ETS1	0.506228	3.604215e-8	6.245024e-4	2.153457e-5
30	8114300	8007799	NR_026680	MGC57346	0.502959	4.554425e-8	7.891452e-4	2.630484e-5
31	8114300	8041995	NM_003128	SPTBN1	0.502198	4.807656e-8	8.330225e-4	2.687169e-5
32	8114300	8046380	NM_000210	ITGA6	0.499985	5.623179e-8	9.743282e-4	3.044776e-5
33	8114300	8145532	NM_001979	EPHX2	0.499016	6.019918e-8	1.043071e-3	3.160822e-5
34	8114300	8043504	NM_002371	MAL	0.497619	6.640024e-8	1.150517e-3	3.383873e-5
35	8114300	7955045	BC008360	FAM113B	0.495623	7.632194e-8	1.322430e-3	3.778372e-5
36	8114300	7918900	ENST00000391083		0.495593	7.648110e-8	1.325188e-3	3.681078e-5
37	8114300	8122986	NM_016224	SNX9	0.495585	7.652447e-8	1.325940e-3	3.583620e-5
38	8114300	8000236	NM_001802	CDR2	0.493527	8.825522e-8	1.529198e-3	4.024206e-5
39	8114300	7933772	NM_020987	ANK3	0.493181	9.038912e-8	1.566172e-3	4.015826e-5
40	8114300	7902874	NM_032270	LRRC8C	0.491985	9.815448e-8	1.700723e-3	4.251806e-5
41	8114300	8063437	NM_173485	TSHZ2	0.489853	1.135921e-7	1.968210e-3	4.800511e-5
42	8114300	8102950	NM_003866	INPP4B	0.486919	1.386555e-7	2.402484e-3	5.720200e-5
43	8114300	7996772	NM_003983	SLC7A6	0.486767	1.400919e-7	2.427373e-3	5.645054e-5
44	8114300	7903010	NM_000969	RPL5	0.486730	1.404438e-7	2.433469e-3	5.530612e-5
45	8114300	8064485	NM_018556	SIRPG	0.486418	1.434374e-7	2.485341e-3	5.522979e-5
46	8114300	8005471	NM_001031	RPS28	0.483691	1.723104e-7	2.985622e-3	6.490483e-5
47	8114300	7898957	NM_013441	RCAN3	0.482480	1.868338e-7	3.237269e-3	6.887806e-5
48	8114300	8068902	NM_015056	RRP1B	0.480605	2.116413e-7	3.667108e-3	7.639809e-5
49	8114300	8066266	NM_005461	MAFB	-0.479902	2.217193e-7	3.841730e-3	7.840265e-5
50	8114300	7924636	NM_014698	TMEM63A	0.479802	2.232004e-7	3.867394e-3	7.734787e-5

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
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	with keyword:
	KEGG Pathway:
Limit output to	rows.
Remove	"self correlations", i.e. correlations of a variable with itself
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