[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
3121	8143885	NM_001098834	GBX1		gastrulation brain homeobox 1

Fetching correlation data, please wait...
Getting list of correlations for id 3121.
Getting list of p-values for id 3121.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.128 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8143885	8024712	NM_033064	ATCAY	0.751097	2.764531e-20	4.790103e-16	4.790103e-16
2	8143885	7913450	NM_005529	HSPG2	0.729534	1.084018e-18	1.878279e-14	9.391393e-15
3	8143885	7930790	NM_006229	PNLIPRP1	0.728564	1.267834e-18	2.196777e-14	7.322589e-15
4	8143885	7936762	NM_001001976	ATE1	-0.712853	1.467360e-17	2.542495e-13	6.356238e-14
5	8143885	8089729	NM_001015887	IGSF11	0.710251	2.166706e-17	3.754252e-13	7.508503e-14
6	8143885	7987701	NM_016642	SPTBN5	0.708387	2.856947e-17	4.950232e-13	8.250386e-14
7	8143885	7959921	AK098523	LOC338797	0.705495	4.369869e-17	7.571671e-13	1.081667e-13
8	8143885	7946860	NM_000352	ABCC8	0.702166	7.081504e-17	1.227012e-12	1.533765e-13
9	8143885	8110821	NM_001044	SLC6A3	0.696016	1.698199e-16	2.942469e-12	3.269410e-13
10	8143885	8030582	NM_001145809	MYH14	0.692330	2.838979e-16	4.919099e-12	4.919099e-13
11	8143885	8010768			0.692291	2.854139e-16	4.945366e-12	4.495787e-13
12	8143885	8069161	NM_198697	KRTAP12-3	0.686538	6.267406e-16	1.085953e-11	9.049612e-13
13	8143885	8038280	NM_000737	CGB	0.685522	7.188324e-16	1.245521e-11	9.580930e-13
14	8143885	8170825	NM_001048181	OPN1MW2	0.684260	8.515374e-16	1.475459e-11	1.053899e-12
15	8143885	7996819	NM_001793	CDH3	0.683229	9.774154e-16	1.693568e-11	1.129045e-12
16	8143885	7906244	NM_001007792	NTRK1	0.682643	1.056706e-15	1.830955e-11	1.144347e-12
17	8143885	8123446	NM_022138	SMOC2	0.678354	1.861119e-15	3.224761e-11	1.896918e-12
18	8143885	8005879	NR_027384	SLC13A2	0.678249	1.886933e-15	3.269488e-11	1.816382e-12
19	8143885	8089714	NM_002338	LSAMP	0.678238	1.889413e-15	3.273787e-11	1.723046e-12
20	8143885	7967641	NM_133448	TMEM132D	0.678096	1.924937e-15	3.335339e-11	1.667669e-12
21	8143885	8072436	NM_001002837	INPP5J	0.678021	1.943858e-15	3.368122e-11	1.603868e-12
22	8143885	8115691	NM_003062	SLIT3	0.677647	2.041072e-15	3.536565e-11	1.607530e-12
23	8143885	8019108	NM_014984	AZI1	0.677358	2.119600e-15	3.672630e-11	1.596796e-12
24	8143885	8030187	NM_033043	CGB5	0.676985	2.225185e-15	3.855577e-11	1.606491e-12
25	8143885	8162998	ENST00000452046		0.675972	2.538121e-15	4.397802e-11	1.759121e-12
26	8143885	7996393	NM_001755	CBFB	-0.675153	2.821798e-15	4.889330e-11	1.880512e-12
27	8143885	8011808	NM_001104577	GPR172B	0.673387	3.542309e-15	6.137759e-11	2.273244e-12
28	8143885	8132270	NM_207172	NPSR1	0.673371	3.549450e-15	6.150132e-11	2.196476e-12
29	8143885	8134737	NM_203397	MBLAC1	0.673117	3.666974e-15	6.353766e-11	2.190954e-12
30	8143885	8049934	NM_022134	GAL3ST2	0.672847	3.796064e-15	6.577440e-11	2.192480e-12
31	8143885	8038670	NM_012427	KLK5	0.672443	3.997839e-15	6.927056e-11	2.234534e-12
32	8143885	7966542	NM_004658	RASAL1	0.671428	4.550222e-15	7.884170e-11	2.463803e-12
33	8143885	8017488	NM_022640	CSH1	0.670873	4.883556e-15	8.461738e-11	2.564163e-12
34	8143885	7995332			0.670396	5.188270e-15	8.989716e-11	2.644034e-12
35	8143885	8076677	NM_138415	PHF21B	0.670297	5.253581e-15	9.102880e-11	2.600823e-12
36	8143885	8087874	NM_025222	WDR82	-0.670044	5.424661e-15	9.399310e-11	2.610919e-12
37	8143885	8033674	NM_024690	MUC16	0.669725	5.648221e-15	9.786673e-11	2.645047e-12
38	8143885	7899101	NM_006314	CNKSR1	0.669446	5.851231e-15	1.013843e-10	2.668008e-12
39	8143885	8049509	NM_015893	PRLH	0.668680	6.445608e-15	1.116831e-10	2.863668e-12
40	8143885	8019937	GENSCAN00000003808		0.667457	7.516871e-15	1.302448e-10	3.256120e-12
41	8143885	7929664	NM_138413	DHDPSL	0.667448	7.524566e-15	1.303782e-10	3.179955e-12
42	8143885	8038292	NM_033043	CGB5	0.667047	7.913044e-15	1.371093e-10	3.264507e-12
43	8143885	8038299	NM_033142	CGB7	0.665824	9.219177e-15	1.597407e-10	3.714900e-12
44	8143885	7914580	NM_153756	FNDC5	0.665663	9.405260e-15	1.629649e-10	3.703749e-12
45	8143885	7920744	NM_000298	PKLR	0.665427	9.686625e-15	1.678402e-10	3.729781e-12
46	8143885	7963427	NM_000424	KRT5	0.665073	1.012226e-14	1.753884e-10	3.812792e-12
47	8143885	7987511	NM_207380	C15orf52	0.664915	1.032344e-14	1.788742e-10	3.805834e-12
48	8143885	7992956	NM_032575	GLIS2	0.664778	1.049989e-14	1.819316e-10	3.790241e-12
49	8143885	8137783	NM_001097620	TMEM184A	0.664485	1.088833e-14	1.886621e-10	3.850246e-12
50	8143885	8132070	NM_002047	GARS	-0.664054	1.148640e-14	1.990248e-10	3.980496e-12

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
Restrict output to	miRs, Transcription factors? (Empty: No restrictions.)
	with keyword:
	KEGG Pathway:
Limit output to	rows.
Remove	"self correlations", i.e. correlations of a variable with itself
Sort results by	positive, negative or absolute value of correlation