[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
7030	7917697	NM_005263	GFI1		growth factor independent 1 transcription repressor

Fetching correlation data, please wait...
Getting list of correlations for id 7030.
Getting list of p-values for id 7030.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.130 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	7917697	8038804	NM_152353	CLDND2	0.635550	3.261840e-13	5.651790e-9	5.651790e-9
2	7917697	8009844	NM_001031803	LLGL2	0.620131	1.732020e-12	3.001071e-8	1.500535e-8
3	7917697	8099200	NM_144720	JAKMIP1	0.619417	1.867231e-12	3.235352e-8	1.078451e-8
4	7917697	7908816	NM_001017403	LGR6	0.615339	2.856862e-12	4.950085e-8	1.237521e-8
5	7917697	7996064	NM_153837	GPR114	0.613804	3.347613e-12	5.800410e-8	1.160082e-8
6	7917697	8087691	NM_001005505	CACNA2D2	0.597430	1.724119e-11	2.987381e-7	4.978969e-8
7	7917697	8174794	NM_001079872	CUL4B	-0.595702	2.038708e-11	3.532470e-7	5.046386e-8
8	7917697	8073842	NM_017931	TTC38	0.595614	2.056189e-11	3.562759e-7	4.453449e-8
9	7917697	8158094	NM_144965	TTC16	0.590292	3.423528e-11	5.931948e-7	6.591053e-8
10	7917697	7934615	NM_004747	DLG5	0.589128	3.822762e-11	6.623700e-7	6.623700e-8
11	7917697	8115099	NM_002609	PDGFRB	0.588784	3.948736e-11	6.841975e-7	6.219977e-8
12	7917697	8056222	NM_001935	DPP4	-0.582589	7.045091e-11	1.220703e-6	1.017252e-7
13	7917697	8036763	NM_004714	DYRK1B	0.582229	7.283389e-11	1.261993e-6	9.707637e-8
14	7917697	8170420	NM_005491	MAMLD1	0.580871	8.254679e-11	1.430288e-6	1.021634e-7
15	7917697	8045398	NM_012233	RAB3GAP1	-0.575444	1.353214e-10	2.344714e-6	1.563143e-7
16	7917697	8126760	NM_005822	RCAN2	0.574496	1.473957e-10	2.553926e-6	1.596204e-7
17	7917697	7922823	NM_025191	EDEM3	-0.572875	1.704762e-10	2.953841e-6	1.737553e-7
18	7917697	8137715	NM_182924	MICALL2	0.572776	1.719900e-10	2.980071e-6	1.655595e-7
19	7917697	8100507	NM_001145460	HOPX	0.572618	1.744376e-10	3.022480e-6	1.590779e-7
20	7917697	7940781	NM_201428	RTN3	-0.570270	2.149971e-10	3.725255e-6	1.862627e-7
21	7917697	8128620	NM_001080450	BEND3	0.566203	3.076598e-10	5.330822e-6	2.538487e-7
22	7917697	7950032	NM_002007	FGF4	0.566196	3.078302e-10	5.333774e-6	2.424443e-7
23	7917697	7911038	NM_205768	ZNF238	-0.564855	3.460779e-10	5.996491e-6	2.607170e-7
24	7917697	8139488	NM_001013398	IGFBP3	0.563595	3.861438e-10	6.690713e-6	2.787797e-7
25	7917697	8021818	NM_001480	GALR1	0.563438	3.914216e-10	6.782162e-6	2.712865e-7
26	7917697	8133704	NM_001110199	SRRM3	0.562759	4.151510e-10	7.193322e-6	2.766662e-7
27	7917697	8158009	NM_014580	SLC2A8	0.562729	4.162008e-10	7.211512e-6	2.670930e-7
28	7917697	8034043	NM_030760	S1PR5	0.561845	4.492435e-10	7.784041e-6	2.780015e-7
29	7917697	8091037	NM_001134659	PRR23A	0.561617	4.581432e-10	7.938247e-6	2.737327e-7
30	7917697	8035539	NM_001492	GDF1	0.561477	4.637327e-10	8.035097e-6	2.678366e-7
31	7917697	7952884	NM_054025	B3GAT1	0.560673	4.969140e-10	8.610029e-6	2.777429e-7
32	7917697	8157905	NM_033446	FAM125B	0.560358	5.105324e-10	8.845995e-6	2.764373e-7
33	7917697	8007550	NM_153006	NAGS	0.559706	5.398962e-10	9.354782e-6	2.834782e-7
34	7917697	7896985	NM_080875	MIB2	0.557999	6.246273e-10	1.082292e-5	3.183211e-7
35	7917697	8031815	NM_173632	ZNF776	-0.557352	6.599590e-10	1.143511e-5	3.267174e-7
36	7917697	7987574	NM_133639	RHOV	0.556688	6.982072e-10	1.209784e-5	3.360510e-7
37	7917697	8151334	NM_005098	MSC	0.556355	7.182379e-10	1.244491e-5	3.363489e-7
38	7917697	8032682	NM_139355	MATK	0.555071	8.005296e-10	1.387078e-5	3.650204e-7
39	7917697	8037495	NM_145288	ZNF296	0.554932	8.100054e-10	1.403496e-5	3.598709e-7
40	7917697	8052024	NM_025133	FBXO11	-0.553819	8.894705e-10	1.541186e-5	3.852964e-7
41	7917697	8053584	NR_027353	CD8A	0.553528	9.115005e-10	1.579357e-5	3.852090e-7
42	7917697	7920928	NM_024897	PAQR6	0.553251	9.329185e-10	1.616468e-5	3.848733e-7
43	7917697	8030044	NM_170720	KCNJ14	0.553175	9.388575e-10	1.626758e-5	3.783159e-7
44	7917697	8060660	NM_052970	HSPA12B	0.553129	9.424895e-10	1.633052e-5	3.711481e-7
45	7917697	7983663	NM_005154	USP8	-0.552335	1.007222e-9	1.745213e-5	3.878251e-7
46	7917697	8122672	NM_015093	TAB2	-0.550161	1.207144e-9	2.091618e-5	4.546996e-7
47	7917697	8120022	NM_001253	CDC5L	-0.549528	1.272153e-9	2.204260e-5	4.689915e-7
48	7917697	8008029	NM_013351	TBX21	0.548167	1.423576e-9	2.466630e-5	5.138812e-7
49	7917697	8064175	NM_020062	SLC2A4RG	0.547935	1.451017e-9	2.514177e-5	5.130973e-7
50	7917697	8022914	NM_018170	RPRD1A	-0.547253	1.534842e-9	2.659421e-5	5.318841e-7

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
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	with keyword:
	KEGG Pathway:
Limit output to	rows.
Remove	"self correlations", i.e. correlations of a variable with itself
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