[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
5444	8130785	NM_005299	GPR31		G protein-coupled receptor 31

Fetching correlation data, please wait...
Getting list of correlations for id 5444.
Getting list of p-values for id 5444.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.136 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8130785	8115849			0.698540	1.189165e-16	2.060466e-12	2.060466e-12
2	8130785	7970262	NM_001008895	CUL4A	-0.688973	4.502719e-16	7.801861e-12	3.900930e-12
3	8130785	8015240	NM_033187	KRTAP4-3	0.685703	7.015547e-16	1.215584e-11	4.051946e-12
4	8130785	8013042	NM_000422	KRT17	0.682063	1.141495e-15	1.977868e-11	4.944669e-12
5	8130785	8092473	NM_004366	CLCN2	0.681023	1.310038e-15	2.269902e-11	4.539805e-12
6	8130785	7944341	NM_006760	UPK2	0.677211	2.160531e-15	3.743552e-11	6.239254e-12
7	8130785	8097146			0.675851	2.577945e-15	4.466805e-11	6.381151e-12
8	8130785	8033674	NM_024690	MUC16	0.675015	2.872530e-15	4.977233e-11	6.221541e-12
9	8130785	8070786	NM_198688	KRTAP10-6	0.673488	3.496532e-15	6.058441e-11	6.731601e-12
10	8130785	8007537	NM_145273	CD300LG	0.671027	4.788641e-15	8.297279e-11	8.297279e-12
11	8130785	8110347	NM_003052	SLC34A1	0.665645	9.426702e-15	1.633365e-10	1.484877e-11
12	8130785	7914433	NM_001703	BAI2	0.664015	1.154131e-14	1.999763e-10	1.666469e-11
13	8130785	8165416	NM_203468	ENTPD2	0.662316	1.423312e-14	2.466173e-10	1.897056e-11
14	8130785	7955663	NM_170754	TENC1	0.656461	2.901028e-14	5.026610e-10	3.590436e-11
15	8130785	7899075	NM_004455	EXTL1	0.654152	3.825064e-14	6.627689e-10	4.418459e-11
16	8130785	8092686	NM_001004312	RTP2	0.654086	3.855542e-14	6.680497e-10	4.175311e-11
17	8130785	7950701	NM_001098816	ODZ4	0.653283	4.242101e-14	7.350288e-10	4.323699e-11
18	8130785	8074168	ENST00000400192		0.653257	4.255169e-14	7.372931e-10	4.096073e-11
19	8130785	8170825	NM_001048181	OPN1MW2	0.653030	4.371354e-14	7.574245e-10	3.986445e-11
20	8130785	7950374	NM_182904	P4HA3	0.652798	4.493384e-14	7.785686e-10	3.892843e-11
21	8130785	8086595	NM_005283	XCR1	0.651913	4.989837e-14	8.645891e-10	4.117091e-11
22	8130785	8049071			0.650644	5.796246e-14	1.004315e-9	4.565070e-11
23	8130785	7977452	ENST00000400192		0.649419	6.692689e-14	1.159642e-9	5.041923e-11
24	8130785	8054020	BC038583	FAM178B	0.649035	6.999907e-14	1.212874e-9	5.053641e-11
25	8130785	8053467	NM_000542	SFTPB	0.648168	7.746291e-14	1.342200e-9	5.368799e-11
26	8130785	8159624	BC052297	C9orf169	0.647470	8.402554e-14	1.455911e-9	5.599656e-11
27	8130785	8071758	NM_005940	MMP11	0.647075	8.796388e-14	1.524150e-9	5.645001e-11
28	8130785	8165639	BC052297	C9orf169	0.646295	9.629703e-14	1.668539e-9	5.959067e-11
29	8130785	7977978	NM_005864	EFS	0.644373	1.202079e-13	2.082843e-9	7.182216e-11
30	8130785	8157804	NM_182487	OLFML2A	0.643749	1.291430e-13	2.237660e-9	7.458868e-11
31	8130785	7913450	NM_005529	HSPG2	0.642939	1.416908e-13	2.455076e-9	7.919602e-11
32	8130785	7960099	NM_170683	P2RX2	0.642917	1.420575e-13	2.461430e-9	7.691968e-11
33	8130785	7996281	NM_001136106	BEAN	0.639199	2.167035e-13	3.754821e-9	1.137825e-10
34	8130785	8065566	NM_001037500	DEFB124	0.637919	2.502824e-13	4.336643e-9	1.275483e-10
35	8130785	7999433	ENST00000390926		0.636140	3.054097e-13	5.291835e-9	1.511953e-10
36	8130785	8019585	NM_030966	KRTAP1-3	0.632279	4.684339e-13	8.116554e-9	2.254598e-10
37	8130785	8015189	NM_030966	KRTAP1-3	0.632279	4.684339e-13	8.116554e-9	2.193663e-10
38	8130785	7923885	NM_014002	IKBKE	0.632247	4.700894e-13	8.145239e-9	2.143484e-10
39	8130785	7949320	NM_130769	GPHA2	0.631511	5.096811e-13	8.831245e-9	2.264422e-10
40	8130785	7946860	NM_000352	ABCC8	0.630452	5.723723e-13	9.917495e-9	2.479374e-10
41	8130785	8025450	NM_001004699	OR2Z1	0.630318	5.808138e-13	1.006376e-8	2.454576e-10
42	8130785	7959234	NM_000545	HNF1A	0.629827	6.127859e-13	1.061774e-8	2.528034e-10
43	8130785	7906307	NM_018240	KIRREL	0.629777	6.161190e-13	1.067549e-8	2.482673e-10
44	8130785	8025456	NM_001004456	OR1M1	0.629658	6.241383e-13	1.081444e-8	2.457828e-10
45	8130785	8074212	NM_001037814	GAB4	0.629321	6.474872e-13	1.121901e-8	2.493114e-10
46	8130785	7936096	NM_014976	PDCD11	0.628793	6.857493e-13	1.188198e-8	2.583039e-10
47	8130785	8159448	NM_206920	MAMDC4	0.627710	7.712335e-13	1.336316e-8	2.843226e-10
48	8130785	8137151	NM_198455	SSPO	0.627679	7.737959e-13	1.340756e-8	2.793242e-10
49	8130785	8049509	NM_015893	PRLH	0.627533	7.861073e-13	1.362088e-8	2.779772e-10
50	8130785	7914667	NM_052896	CSMD2	0.627514	7.877026e-13	1.364852e-8	2.729705e-10

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
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	KEGG Pathway:
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Remove	"self correlations", i.e. correlations of a variable with itself
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