[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
2114	7975956	NM_001513	GSTZ1		glutathione transferase zeta 1

Fetching correlation data, please wait...
Getting list of correlations for id 2114.
Getting list of p-values for id 2114.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.084 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	7975956	8071997	NM_000496	CRYBB2	0.482565	1.857742e-7	3.218910e-3	3.218910e-3
2	7975956	7956229	NM_001135195	SLC39A5	0.440996	2.496305e-6	4.325348e-2	2.162674e-2
3	7975956	8018906	ENST00000410387		0.436980	3.152329e-6	5.462040e-2	1.820680e-2
4	7975956	8085311	NM_001001331	ATP2B2	0.427449	5.420051e-6	9.391322e-2	2.347831e-2
5	7975956	7921834	NM_001643	APOA2	0.426097	5.845584e-6	1.012864e-1	2.025729e-2
6	7975956	7961097	AK128230	FLJ46363	0.422206	7.252208e-6	1.256590e-1	2.094317e-2
7	7975956	7933469	NM_021226	ARHGAP22	0.420613	7.915693e-6	1.371552e-1	1.959360e-2
8	7975956	8023059	ENST00000410247		0.420056	8.160690e-6	1.414003e-1	1.767503e-2
9	7975956	8144604	NR_001578	TDH	0.418495	8.886293e-6	1.539728e-1	1.710809e-2
10	7975956	8153930	NM_001029976	ZNF16	0.416335	9.990992e-6	1.731139e-1	1.731139e-2
11	7975956	8044764	ENST00000410924		0.411075	1.324521e-5	2.294997e-1	2.086361e-2
12	7975956	8027748	NM_021910	FXYD3	0.406830	1.657272e-5	2.871555e-1	2.392962e-2
13	7975956	7977567	BC146951	KLHL33	0.405918	1.738373e-5	3.012079e-1	2.316984e-2
14	7975956	7985130	NM_001101404	SH2D7	0.405301	1.795283e-5	3.110687e-1	2.221919e-2
15	7975956	8043157	NM_198482	SH2D6	0.402707	2.054345e-5	3.559564e-1	2.373043e-2
16	7975956	8075969			0.401961	2.135077e-5	3.699448e-1	2.312155e-2
17	7975956	7996883	NM_005329	HAS3	0.398782	2.513794e-5	4.355650e-1	2.562147e-2
18	7975956	7979357	NM_021728	OTX2	0.398732	2.520325e-5	4.366968e-1	2.426093e-2
19	7975956	7956120	NM_001982	ERBB3	0.398697	2.524752e-5	4.374638e-1	2.302441e-2
20	7975956	8085293	NR_024138	GHRL	0.398581	2.539832e-5	4.400768e-1	2.200384e-2
21	7975956	8158145	AK057719		0.398505	2.549686e-5	4.417840e-1	2.103734e-2
22	7975956	7937208	NM_198472	C10orf125	0.398459	2.555696e-5	4.428254e-1	2.012843e-2
23	7975956	8133728	NM_001110354	ZP3	0.397359	2.702970e-5	4.683435e-1	2.036276e-2
24	7975956	8176923	NR_001554	CSPG4P1Y	0.395806	2.924639e-5	5.067521e-1	2.111467e-2
25	7975956	8177410	NR_001554	CSPG4P1Y	0.395806	2.924639e-5	5.067521e-1	2.027008e-2
26	7975956	7957275	ENST00000411341		0.391295	3.668859e-5	6.357032e-1	2.445012e-2
27	7975956	7915695	NM_012222	MUTYH	0.390464	3.823962e-5	6.625779e-1	2.453992e-2
28	7975956	7978107	NM_006177	NRL	0.390034	3.906451e-5	6.768708e-1	2.417396e-2
29	7975956	8002143	NM_000229	LCAT	0.388978	4.116498e-5	7.132656e-1	2.459536e-2
30	7975956	8012028	NM_080912	ASGR2	0.388848	4.143152e-5	7.178840e-1	2.392947e-2
31	7975956	7937813	NM_005706	TSSC4	0.386310	4.695299e-5	8.135544e-1	2.624369e-2
32	7975956	8157383	NM_032888	COL27A1	0.386298	4.698031e-5	8.140278e-1	2.543837e-2
33	7975956	7918533	NM_020683	ADORA3	0.386107	4.742413e-5	8.217179e-1	2.490054e-2
34	7975956	7955170	NM_005430	WNT1	0.385407	4.907735e-5	8.503632e-1	2.501068e-2
35	7975956	8097936			0.385400	4.909605e-5	8.506873e-1	2.430535e-2
36	7975956	8002181	NM_022357	DPEP3	0.384784	5.059700e-5	8.766942e-1	2.435262e-2
37	7975956	7949873	NM_080658	ACY3	0.384649	5.093222e-5	8.825026e-1	2.385142e-2
38	7975956	8012951	NM_006382	CDRT1	0.384525	5.124004e-5	8.878361e-1	2.336411e-2
39	7975956	7926871			0.384277	5.186406e-5	8.986486e-1	2.304227e-2
40	7975956	8001615	NM_001297	CNGB1	0.383380	5.418141e-5	9.388012e-1	2.347003e-2
41	7975956	7984408	NM_145160	MAP2K5	-0.383345	5.427118e-5	9.403567e-1	2.293553e-2
42	7975956	8064388	NM_033409	C20orf54	0.383284	5.443287e-5	9.431584e-1	2.245615e-2
43	7975956	8039748	NM_130786	A1BG	0.383149	5.479242e-5	9.493883e-1	2.207880e-2
44	7975956	8002706	AK129695	C16orf47	0.383004	5.517955e-5	9.560961e-1	2.172946e-2
45	7975956	8045030	NM_001080527	MYO7B	0.382179	5.743095e-5	9.951061e-1	2.211347e-2
46	7975956	8074061	ENST00000410149		0.382043	5.781151e-5	1.001700e+0	2.177609e-2
47	7975956	7901613	NM_147161	ACOT11	0.381659	5.889660e-5	1.020501e+0	2.171279e-2
48	7975956	8082928	NM_001002026	CLDN18	0.381451	5.949012e-5	1.030785e+0	2.147469e-2
49	7975956	8071134	ENST00000444596		0.380434	6.248407e-5	1.082661e+0	2.209513e-2
50	7975956	7945125	BC113593	PRR10	0.379303	6.597500e-5	1.143149e+0	2.286298e-2

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
Restrict output to	miRs, Transcription factors? (Empty: No restrictions.)
	with keyword:
	KEGG Pathway:
Limit output to	rows.
Remove	"self correlations", i.e. correlations of a variable with itself
Sort results by	positive, negative or absolute value of correlation