[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
User requested variable id 1317.
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
1317	8177410	NR_001554	CSPG4P1Y		chondroitin sulfate proteoglycan 4 pseudogene 1, Y-linked

Fetching correlation data, please wait...
Getting list of correlations for id 1317.
Getting list of p-values for id 1317.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.112 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8177410	8176923	NR_001554	CSPG4P1Y	1.000000	0.000000e+0	0.000000e+0	0.000000e+0
2	8177410	7987792	NM_178034	PLA2G4D	0.674366	3.123193e-15	5.411556e-11	2.705778e-11
3	8177410	8117748	NM_206814	MOG	0.667073	7.887332e-15	1.366638e-10	4.555460e-11
4	8177410	8070867	ENST00000416043		0.665745	9.310518e-15	1.613234e-10	4.033084e-11
5	8177410	7982377	NM_013372	GREM1	0.661906	1.496767e-14	2.593448e-10	5.186896e-11
6	8177410	8178322	NM_006937	SUMO2	-0.660734	1.728008e-14	2.994119e-10	4.990199e-11
7	8177410	7967641	NM_133448	TMEM132D	0.660197	1.845078e-14	3.196967e-10	4.567095e-11
8	8177410	8169240	NM_002764	PRPS1	-0.660049	1.878729e-14	3.255274e-10	4.069093e-11
9	8177410	8096556	NM_015143	METAP1	-0.658937	2.150778e-14	3.726654e-10	4.140726e-11
10	8177410	8106479	NM_004866	SCAMP1	-0.652438	4.689619e-14	8.125703e-10	8.125703e-11
11	8177410	8098414	NM_021928	SPCS3	-0.651600	5.178309e-14	8.972455e-10	8.156777e-11
12	8177410	8001496	NM_007006	NUDT21	-0.650610	5.819411e-14	1.008329e-9	8.402744e-11
13	8177410	8095566	NM_173468	MOBKL1A	-0.650097	6.180749e-14	1.070938e-9	8.237988e-11
14	8177410	8082788	NM_001134422	CDV3	-0.649756	6.432941e-14	1.114636e-9	7.961683e-11
15	8177410	7983335	NM_016396	CTDSPL2	-0.649216	6.853480e-14	1.187502e-9	7.916683e-11
16	8177410	8052798	NM_014911	AAK1	-0.648277	7.648078e-14	1.325182e-9	8.282390e-11
17	8177410	7981249	NM_032233	SETD3	-0.648120	7.789480e-14	1.349683e-9	7.939313e-11
18	8177410	8018315	NM_006937	SUMO2	-0.646266	9.661877e-14	1.674113e-9	9.300630e-11
19	8177410	8054614	NM_022662	ANAPC1	-0.645506	1.054952e-13	1.827915e-9	9.620605e-11
20	8177410	7899562	NM_133178	PTPRU	0.644823	1.141447e-13	1.977785e-9	9.888926e-11
21	8177410	8173613	NM_016120	RLIM	-0.642070	1.564768e-13	2.711273e-9	1.291082e-10
22	8177410	8011626	NM_003342	UBE2G1	-0.641776	1.618066e-13	2.803624e-9	1.274374e-10
23	8177410	8074716	NR_003267	GGT3P	0.641758	1.621444e-13	2.809477e-9	1.221512e-10
24	8177410	8086985	NM_000094	COL7A1	0.641214	1.724850e-13	2.988647e-9	1.245269e-10
25	8177410	8023228	NM_017653	DYM	-0.640446	1.881987e-13	3.260919e-9	1.304367e-10
26	8177410	8009366	NM_015462	NOL11	-0.640405	1.890710e-13	3.276034e-9	1.260013e-10
27	8177410	8049509	NM_015893	PRLH	0.639990	1.981783e-13	3.433836e-9	1.271791e-10
28	8177410	7912764	NM_198546	SPATA21	0.639790	2.027133e-13	3.512414e-9	1.254434e-10
29	8177410	8043187	NM_005911	MAT2A	-0.638875	2.247717e-13	3.894619e-9	1.342972e-10
30	8177410	7945688	NR_003512	INS-IGF2	0.638382	2.375770e-13	4.116497e-9	1.372166e-10
31	8177410	8074316	NR_003267	GGT3P	0.637994	2.481828e-13	4.300263e-9	1.387182e-10
32	8177410	8026133	NM_152654	DAND5	0.636790	2.840165e-13	4.921154e-9	1.537861e-10
33	8177410	8045030	NM_001080527	MYO7B	0.636524	2.926174e-13	5.070182e-9	1.536419e-10
34	8177410	8145652	NM_015344	LEPROTL1	-0.636153	3.049838e-13	5.284455e-9	1.554251e-10
35	8177410	8177709	NM_206809	MOG	0.635810	3.168811e-13	5.490599e-9	1.568743e-10
36	8177410	8067011	NM_015339	ADNP	-0.635369	3.328255e-13	5.766867e-9	1.601907e-10
37	8177410	7934367	NM_004034	ANXA7	-0.635263	3.367669e-13	5.835160e-9	1.577070e-10
38	8177410	8030220	NM_003660	PPFIA3	0.635194	3.393650e-13	5.880177e-9	1.547415e-10
39	8177410	8130567	NM_030752	TCP1	-0.635074	3.439204e-13	5.959109e-9	1.527977e-10
40	8177410	8023757	NM_006566	CD226	-0.635058	3.445122e-13	5.969363e-9	1.492341e-10
41	8177410	8069910	NM_020706	SFRS15	-0.633239	4.214214e-13	7.301968e-9	1.780968e-10
42	8177410	7975747	NM_001933	DLST	-0.632667	4.488552e-13	7.777314e-9	1.851741e-10
43	8177410	8019807	NM_005151	USP14	-0.632495	4.574326e-13	7.925935e-9	1.843241e-10
44	8177410	8084524	NM_004443	EPHB3	0.632306	4.670848e-13	8.093178e-9	1.839359e-10
45	8177410	8077192	NM_000482	APOA4	0.632293	4.677031e-13	8.103892e-9	1.800865e-10
46	8177410	8022608			0.631609	5.042578e-13	8.737276e-9	1.899408e-10
47	8177410	8174636	NM_006937	SUMO2	-0.631608	5.042994e-13	8.737996e-9	1.859148e-10
48	8177410	8175420	NM_002139	RBMX	-0.631449	5.131923e-13	8.892083e-9	1.852517e-10
49	8177410	8139314	NM_033508	GCK	0.630462	5.717185e-13	9.906166e-9	2.021666e-10
50	8177410	8097867	NM_015196	KIAA0922	-0.630158	5.910308e-13	1.024079e-8	2.048158e-10

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
Restrict output to	miRs, Transcription factors? (Empty: No restrictions.)
	with keyword:
	KEGG Pathway:
Limit output to	rows.
Remove	"self correlations", i.e. correlations of a variable with itself
Sort results by	positive, negative or absolute value of correlation