[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
3886	8030753	NM_001030047	KLK3		kallikrein-related peptidase 3

Fetching correlation data, please wait...
Getting list of correlations for id 3886.
Getting list of p-values for id 3886.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.137 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8030753	7936762	NM_001001976	ATE1	-0.765674	1.858718e-21	3.220601e-17	3.220601e-17
2	8030753	8172876	NM_006306	SMC1A	-0.765254	2.014303e-21	3.490182e-17	1.745091e-17
3	8030753	8053728	NM_000798	DRD5	0.755282	1.298569e-20	2.250031e-16	7.500103e-17
4	8030753	8131056	NM_017781	CYP2W1	0.740314	1.811767e-19	3.139248e-15	7.848121e-16
5	8030753	8028407	NM_000540	RYR1	0.740126	1.870670e-19	3.241310e-15	6.482620e-16
6	8030753	8110821	NM_001044	SLC6A3	0.738132	2.620697e-19	4.540881e-15	7.568135e-16
7	8030753	8021357	NM_004852	ONECUT2	0.737890	2.729966e-19	4.730212e-15	6.757446e-16
8	8030753	7899265	NM_006142	SFN	0.736866	3.241732e-19	5.616949e-15	7.021186e-16
9	8030753	8110894	NM_017755	NSUN2	-0.736857	3.246287e-19	5.624842e-15	6.249825e-16
10	8030753	7990683	NM_015162	ACSBG1	0.736684	3.341654e-19	5.790083e-15	5.790083e-16
11	8030753	7937560	NM_002457	MUC2	0.736289	3.569883e-19	6.185537e-15	5.623215e-16
12	8030753	8001014	NM_173502	PRSS36	0.732449	6.739505e-19	1.167754e-14	9.731283e-16
13	8030753	8015323	NM_153490	KRT13	0.731962	7.300131e-19	1.264894e-14	9.729951e-16
14	8030753	7927099	NR_026827	LOC84856	0.731918	7.352220e-19	1.273919e-14	9.099423e-16
15	8030753	7995332			0.731278	8.163496e-19	1.414489e-14	9.429926e-16
16	8030753	7998414	ENST00000428636		0.730329	9.527518e-19	1.650833e-14	1.031771e-15
17	8030753	7921583	NM_001098398	COPA	-0.727922	1.406010e-18	2.436194e-14	1.433055e-15
18	8030753	8100902	NM_032217	ANKRD17	-0.727034	1.621502e-18	2.809576e-14	1.560876e-15
19	8030753	7987701	NM_016642	SPTBN5	0.726093	1.884677e-18	3.265579e-14	1.718726e-15
20	8030753	8067409	NM_005560	LAMA5	0.725099	2.207428e-18	3.824811e-14	1.912406e-15
21	8030753	8024373	NM_001039846	IZUMO4	0.724492	2.430500e-18	4.211328e-14	2.005394e-15
22	8030753	7916304	NM_147193	GLIS1	0.723852	2.689819e-18	4.660650e-14	2.118477e-15
23	8030753	7913300	NM_016287	HP1BP3	-0.723146	3.006478e-18	5.209324e-14	2.264924e-15
24	8030753	8046922	NM_000090	COL3A1	0.722398	3.381487e-18	5.859102e-14	2.441293e-15
25	8030753	8071489	NM_005446	P2RX6	0.721924	3.642593e-18	6.311520e-14	2.524608e-15
26	8030753	8017776	NM_014877	HELZ	-0.721893	3.660267e-18	6.342145e-14	2.439286e-15
27	8030753	8138450	NM_152898	FERD3L	0.721366	3.974939e-18	6.887376e-14	2.550880e-15
28	8030753	7931728	NM_015155	LARP4B	-0.720281	4.706908e-18	8.155659e-14	2.912735e-15
29	8030753	8083282	NM_032383	HPS3	-0.719719	5.136219e-18	8.899527e-14	3.068802e-15
30	8030753	7934367	NM_004034	ANXA7	-0.719489	5.322936e-18	9.223052e-14	3.074351e-15
31	8030753	8090091	NM_198402	PTPLB	-0.719164	5.597800e-18	9.699309e-14	3.128809e-15
32	8030753	8007259	ENST00000225928		0.717584	7.142677e-18	1.237612e-13	3.867536e-15
33	8030753	7903632	NM_001408	CELSR2	0.717084	7.713076e-18	1.336445e-13	4.049832e-15
34	8030753	8145894	NM_004674	ASH2L	-0.716954	7.867568e-18	1.363214e-13	4.009452e-15
35	8030753	7996027	NM_002996	CX3CL1	0.716941	7.883026e-18	1.365892e-13	3.902548e-15
36	8030753	8049942	NM_080741	NEU4	0.716765	8.099500e-18	1.403400e-13	3.898334e-15
37	8030753	8036232	NM_001039876	C19orf46	0.716647	8.247003e-18	1.428958e-13	3.862049e-15
38	8030753	8088425	NM_138805	FAM3D	0.716580	8.331108e-18	1.443531e-13	3.798766e-15
39	8030753	8159036	NM_139025	ADAMTS13	0.716286	8.714748e-18	1.510004e-13	3.871806e-15
40	8030753	7955589	NM_002135	NR4A1	0.716144	8.906315e-18	1.543197e-13	3.857993e-15
41	8030753	8049509	NM_015893	PRLH	0.714664	1.115803e-17	1.933352e-13	4.715494e-15
42	8030753	7927307	NM_001630	ANXA8L2	0.714225	1.192665e-17	2.066530e-13	4.920309e-15
43	8030753	8067506	BC137326	C20orf151	0.713779	1.275885e-17	2.210725e-13	5.141221e-15
44	8030753	8030582	NM_001145809	MYH14	0.713460	1.338923e-17	2.319952e-13	5.272618e-15
45	8030753	7898609	NM_000929	PLA2G5	0.712704	1.500442e-17	2.599815e-13	5.777367e-15
46	8030753	8066200	BC013755	TTI1	-0.712507	1.545600e-17	2.678062e-13	5.821874e-15
47	8030753	7896761	NM_152486	SAMD11	0.711808	1.716888e-17	2.974852e-13	6.329473e-15
48	8030753	8095048	NM_030917	FIP1L1	-0.710600	2.056930e-17	3.564043e-13	7.425090e-15
49	8030753	8087907	NM_020163	SEMA3G	0.709265	2.508899e-17	4.347169e-13	8.871774e-15
50	8030753	8112592	NM_004472	FOXD1	0.709124	2.561862e-17	4.438938e-13	8.877877e-15

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
Restrict output to	miRs, Transcription factors? (Empty: No restrictions.)
	with keyword:
	KEGG Pathway:
Limit output to	rows.
Remove	"self correlations", i.e. correlations of a variable with itself
Sort results by	positive, negative or absolute value of correlation