[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
5283	8038815	NM_030657	LIM2		lens intrinsic membrane protein 2, 19kDa

Fetching correlation data, please wait...
Getting list of correlations for id 5283.
Getting list of p-values for id 5283.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.152 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8038815	8063796	NM_001794	CDH4	0.773394	4.104548e-22	7.111951e-18	7.111951e-18
2	8038815	8098732	NM_033178	DUX4	0.758044	7.820481e-21	1.355055e-16	6.775274e-17
3	8038815	8098740	NM_033178	DUX4	0.755827	1.175602e-20	2.036966e-16	6.789888e-17
4	8038815	8112592	NM_004472	FOXD1	0.750052	3.331016e-20	5.771652e-16	1.442913e-16
5	8038815	8105714	NM_139168	SFRS12	-0.749730	3.527546e-20	6.112180e-16	1.222436e-16
6	8038815	8070933	NM_006657	FTCD	0.747574	5.163509e-20	8.946812e-16	1.491135e-16
7	8038815	8079305	NM_003278	CLEC3B	0.747112	5.600373e-20	9.703765e-16	1.386252e-16
8	8038815	8040479	NM_182828	GDF7	0.746337	6.414288e-20	1.111404e-15	1.389255e-16
9	8038815	8104122	NM_033178	DUX4	0.745874	6.954840e-20	1.205065e-15	1.338961e-16
10	8038815	7945688	NR_003512	INS-IGF2	0.745112	7.941014e-20	1.375939e-15	1.375939e-16
11	8038815	7911376	NM_001142467	HES4	0.744636	8.625016e-20	1.494457e-15	1.358597e-16
12	8038815	8159142	NM_000093	COL5A1	0.744111	9.446555e-20	1.636805e-15	1.364004e-16
13	8038815	8059014	NM_017521	FEV	0.744095	9.472656e-20	1.641327e-15	1.262559e-16
14	8038815	8121209	NM_005604	POU3F2	0.740783	1.672741e-19	2.898358e-15	2.070255e-16
15	8038815	7945536	NM_016564	CEND1	0.740552	1.739931e-19	3.014778e-15	2.009852e-16
16	8038815	7962703	NM_001844	COL2A1	0.736974	3.183492e-19	5.516036e-15	3.447522e-16
17	8038815	7928291	NM_004273	CHST3	0.736658	3.355994e-19	5.814931e-15	3.420548e-16
18	8038815	8131195	NM_133463	AMZ1	0.736223	3.609439e-19	6.254076e-15	3.474486e-16
19	8038815	8125568	NM_080680	COL11A2	0.733717	5.470023e-19	9.477909e-15	4.988373e-16
20	8038815	7985920	NM_001039958	MESP2	0.733570	5.604529e-19	9.710967e-15	4.855484e-16
21	8038815	8170786	AF514420	LCA10	0.733414	5.750549e-19	9.963976e-15	4.744751e-16
22	8038815	8006562	NM_033315	RASL10B	0.732656	6.514452e-19	1.128759e-14	5.130723e-16
23	8038815	8033825	NM_015719	COL5A3	0.732610	6.564173e-19	1.137374e-14	4.945105e-16
24	8038815	8153101	NM_152888	COL22A1	0.731778	7.523142e-19	1.303535e-14	5.431395e-16
25	8038815	8064370	NM_004609	TCF15	0.731529	7.835113e-19	1.357590e-14	5.430360e-16
26	8038815	7942715	NM_006189	OMP	0.731235	8.220630e-19	1.424389e-14	5.478418e-16
27	8038815	8049682	hsa-mir-149		0.731221	8.239148e-19	1.427597e-14	5.287397e-16
28	8038815	8176159	NM_020994	CTAG2	0.731181	8.293811e-19	1.437069e-14	5.132388e-16
29	8038815	8031441	NM_032430	BRSK1	0.730639	9.059388e-19	1.569720e-14	5.412828e-16
30	8038815	7911435	NM_001014980	FAM132A	0.730213	9.708918e-19	1.682264e-14	5.607547e-16
31	8038815	8075992	NM_006941	SOX10	0.730112	9.869522e-19	1.710092e-14	5.516426e-16
32	8038815	7949015	NM_001144936	C11orf95	0.728099	1.366605e-18	2.367917e-14	7.399739e-16
33	8038815	7919582	XR_039086	LOC100133075	0.727646	1.469698e-18	2.546545e-14	7.716803e-16
34	8038815	7937560	NM_002457	MUC2	0.727079	1.609677e-18	2.789088e-14	8.203200e-16
35	8038815	8036252	NM_015526	CLIP3	0.726553	1.751056e-18	3.034055e-14	8.668728e-16
36	8038815	8010583	NR_027255	LOC388428	0.726468	1.775159e-18	3.075818e-14	8.543939e-16
37	8038815	8086985	NM_000094	COL7A1	0.725850	1.958943e-18	3.394260e-14	9.173677e-16
38	8038815	7960894	NR_024420	LOC389634	0.724891	2.281547e-18	3.953236e-14	1.040325e-15
39	8038815	8076747	AK123383	LOC642648	0.724186	2.551220e-18	4.420499e-14	1.133461e-15
40	8038815	8176986	NM_013239	PPP2R3B	0.724109	2.582718e-18	4.475075e-14	1.118769e-15
41	8038815	8019693	NM_148896	NPB	0.723934	2.655053e-18	4.600410e-14	1.122051e-15
42	8038815	8010696	NM_148896	NPB	0.723934	2.655053e-18	4.600410e-14	1.095336e-15
43	8038815	8137962	AK125308	LOC100129484	0.723667	2.769292e-18	4.798353e-14	1.115896e-15
44	8038815	7992302	NM_020825	CRAMP1L	0.723656	2.773990e-18	4.806493e-14	1.092385e-15
45	8038815	8171087	NM_013239	PPP2R3B	0.723175	2.992684e-18	5.185423e-14	1.152316e-15
46	8038815	8006865	NM_032192	PPP1R1B	0.722468	3.344631e-18	5.795242e-14	1.259835e-15
47	8038815	8063601	NM_178456	C20orf85	0.722252	3.459931e-18	5.995022e-14	1.275537e-15
48	8038815	7991828	ENST00000431654		0.721300	4.015885e-18	6.958323e-14	1.449651e-15
49	8038815	8032312	NM_138813	ATP8B3	0.720538	4.522936e-18	7.836891e-14	1.599366e-15
50	8038815	7994961	NM_001330	CTF1	0.720278	4.709640e-18	8.160394e-14	1.632079e-15

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
Restrict output to	miRs, Transcription factors? (Empty: No restrictions.)
	with keyword:
	KEGG Pathway:
Limit output to	rows.
Remove	"self correlations", i.e. correlations of a variable with itself
Sort results by	positive, negative or absolute value of correlation