[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
7388	8086842	NM_002375	MAP4		microtubule-associated protein 4

Fetching correlation data, please wait...
Getting list of correlations for id 7388.
Getting list of p-values for id 7388.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.119 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8086842	8067040	NM_012340	NFATC2	0.747207	5.507867e-20	9.543481e-16	9.543481e-16
2	8086842	7994603	NM_001030288	SPN	0.721358	3.979680e-18	6.895592e-14	3.447796e-14
3	8086842	8043725	NM_001079	ZAP70	0.696985	1.481876e-16	2.567646e-12	8.558821e-13
4	8086842	8085431	NM_024923	NUP210	0.693430	2.437360e-16	4.223214e-12	1.055803e-12
5	8086842	7953200	NM_001759	CCND2	0.692383	2.818223e-16	4.883134e-12	9.766268e-13
6	8086842	7972946	NM_007368	RASA3	0.690192	3.810809e-16	6.602989e-12	1.100498e-12
7	8086842	8123062	NM_020823	TMEM181	0.680094	1.481039e-15	2.566197e-11	3.665996e-12
8	8086842	7944152	NM_001558	IL10RA	0.679032	1.702969e-15	2.950734e-11	3.688418e-12
9	8086842	8150962	NM_014729	TOX	0.676348	2.417228e-15	4.188332e-11	4.653702e-12
10	8086842	8093685	NM_002111	HTT	0.672975	3.734325e-15	6.470465e-11	6.470465e-12
11	8086842	8022531	NM_000271	NPC1	0.671546	4.482368e-15	7.766599e-11	7.060544e-12
12	8086842	7906061	NM_152280	SYT11	0.670694	4.995437e-15	8.655593e-11	7.212995e-12
13	8086842	8133167	NM_153033	KCTD7	0.668771	6.371609e-15	1.104009e-10	8.492374e-12
14	8086842	8060675	NM_021873	CDC25B	0.663589	1.216659e-14	2.108104e-10	1.505789e-11
15	8086842	7928395	NM_173540	FUT11	0.661086	1.655199e-14	2.867964e-10	1.911976e-11
16	8086842	8134470	NM_003496	TRRAP	0.659810	1.934217e-14	3.351417e-10	2.094636e-11
17	8086842	8109528	NM_001037332	CYFIP2	0.659697	1.960918e-14	3.397682e-10	1.998636e-11
18	8086842	8164644	NM_033387	FAM78A	0.658787	2.190265e-14	3.795072e-10	2.108374e-11
19	8086842	7937802	NM_004356	CD81	0.658319	2.318129e-14	4.016623e-10	2.114012e-11
20	8086842	8077804	NM_014760	TATDN2	0.656380	2.929532e-14	5.076001e-10	2.538000e-11
21	8086842	8172914	NM_031407	HUWE1	0.653311	4.227856e-14	7.325606e-10	3.488384e-11
22	8086842	7951752	NM_020886	USP28	0.652264	4.787360e-14	8.295060e-10	3.770482e-11
23	8086842	7928369	NM_004922	SEC24C	0.652057	4.906095e-14	8.500792e-10	3.695996e-11
24	8086842	7963614	NM_000889	ITGB7	0.651631	5.159025e-14	8.939043e-10	3.724601e-11
25	8086842	8085665	NM_015150	RFTN1	0.650932	5.602404e-14	9.707286e-10	3.882914e-11
26	8086842	8115234	NM_001155	ANXA6	0.650300	6.035286e-14	1.045734e-9	4.022054e-11
27	8086842	8126588	NM_020750	XPO5	0.649946	6.291358e-14	1.090104e-9	4.037421e-11
28	8086842	7974835	NM_006255	PRKCH	0.649607	6.546702e-14	1.134347e-9	4.051240e-11
29	8086842	8068974	NM_003274	TRAPPC10	0.648936	7.082058e-14	1.227108e-9	4.231407e-11
30	8086842	8073081	NM_145298	APOBEC3F	0.647186	8.684560e-14	1.504774e-9	5.015913e-11
31	8086842	8111286	NM_013235	RNASEN	0.647035	8.838311e-14	1.531414e-9	4.940045e-11
32	8086842	7939383	NM_024841	PRR5L	0.646919	8.958056e-14	1.552162e-9	4.850507e-11
33	8086842	8158829	NM_013318	BAT2L1	0.646362	9.555197e-14	1.655629e-9	5.017058e-11
34	8086842	8036525	NM_001042600	MAP4K1	0.645076	1.108615e-13	1.920897e-9	5.649697e-11
35	8086842	7993546	NM_006985	NPIP	0.641366	1.695252e-13	2.937364e-9	8.392467e-11
36	8086842	8005171	NM_016113	TRPV2	0.641078	1.751743e-13	3.035245e-9	8.431235e-11
37	8086842	7999769	NM_006985	NPIP	0.638620	2.313185e-13	4.008055e-9	1.083258e-10
38	8086842	7912412	NM_004958	MTOR	0.637974	2.487466e-13	4.310032e-9	1.134219e-10
39	8086842	8131496	NM_138426	GLCCI1	0.637465	2.633573e-13	4.563192e-9	1.170049e-10
40	8086842	8080100	NM_015106	RAD54L2	0.634879	3.514245e-13	6.089132e-9	1.522283e-10
41	8086842	7939767	NM_003682	MADD	0.634322	3.738263e-13	6.477287e-9	1.579826e-10
42	8086842	7917649	NM_003243	TGFBR3	0.633494	4.097371e-13	7.099514e-9	1.690360e-10
43	8086842	7966938	NM_006836	GCN1L1	0.630589	5.638456e-13	9.769753e-9	2.272036e-10
44	8086842	7900235	NM_012090	MACF1	0.629753	6.177397e-13	1.070358e-8	2.432631e-10
45	8086842	7974366	NM_000956	PTGER2	0.629578	6.296126e-13	1.090930e-8	2.424288e-10
46	8086842	7980773	NM_001080414	CCDC88C	0.628771	6.874053e-13	1.191067e-8	2.589276e-10
47	8086842	8014891	NM_012481	IKZF3	0.626364	8.918292e-13	1.545272e-8	3.287814e-10
48	8086842	8128956	NM_002037	FYN	0.625980	9.294511e-13	1.610460e-8	3.355125e-10
49	8086842	7993580	NM_006985	NPIP	0.625725	9.552671e-13	1.655191e-8	3.377941e-10
50	8086842	7944223	NM_005933	MLL	0.625222	1.008241e-12	1.746980e-8	3.493960e-10

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
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	KEGG Pathway:
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