[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
User requested variable id 13525.
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
13525	7999769	NM_006985	NPIP		nuclear pore complex interacting protein

Fetching correlation data, please wait...
Getting list of correlations for id 13525.
Getting list of p-values for id 13525.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.087 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	7999769	7993546	NM_006985	NPIP	0.995325	2.201222e-106	3.814057e-102	3.814057e-102
2	7999769	7993359	NM_006985	NPIP	0.978945	6.639969e-73	1.150507e-68	5.752537e-69
3	7999769	7993404	NM_006985	NPIP	0.976125	4.015176e-70	6.957095e-66	2.319032e-66
4	7999769	7993349	NM_006985	NPIP	0.974499	1.145655e-68	1.985077e-64	4.962693e-65
5	7999769	7993580	NM_006985	NPIP	0.947137	1.158033e-52	2.006523e-48	4.013046e-49
6	7999769	7999766	NM_006985	NPIP	0.910574	2.598463e-41	4.502357e-37	7.503928e-38
7	7999769	7999614	NM_006985	NPIP	0.898556	1.256987e-38	2.177982e-34	3.111403e-35
8	7999769	7994559	NR_003610	PDXDC2P	0.894664	7.895248e-38	1.368010e-33	1.710012e-34
9	7999769	7997239	NR_003610	PDXDC2P	0.891202	3.813725e-37	6.608041e-33	7.342267e-34
10	7999769	7999634	NM_006985	NPIP	0.887789	1.711976e-36	2.966340e-32	2.966340e-33
11	7999769	8000501	NR_003610	PDXDC2P	0.887572	1.880225e-36	3.257865e-32	2.961696e-33
12	7999769	8000537	NR_003610	PDXDC2P	0.882219	1.792910e-35	3.106575e-31	2.588813e-32
13	7999769	7994026	NM_130464	NPIPL3	0.866601	7.242186e-33	1.254854e-28	9.652720e-30
14	7999769	8022320	ENST00000446615		0.861811	3.923216e-32	6.797757e-28	4.855540e-29
15	7999769	8000676	NM_130464	NPIPL3	0.861045	5.111341e-32	8.856420e-28	5.904280e-29
16	7999769	8000131	NM_130464	NPIPL3	0.860703	5.747873e-32	9.959339e-28	6.224587e-29
17	7999769	7994371	ENST00000446615		0.854069	5.291011e-31	9.167735e-27	5.392785e-28
18	7999769	8000205	NM_130464	NPIPL3	0.852549	8.664683e-31	1.501330e-26	8.340720e-28
19	7999769	8158829	NM_013318	BAT2L1	0.820055	1.029731e-26	1.784216e-22	9.390609e-24
20	7999769	7944223	NM_005933	MLL	0.817902	1.792086e-26	3.105147e-22	1.552574e-23
21	7999769	8134470	NM_003496	TRRAP	0.802749	7.273768e-25	1.260326e-20	6.001552e-22
22	7999769	8172914	NM_031407	HUWE1	0.797443	2.468139e-24	4.276544e-20	1.943884e-21
23	7999769	8085431	NM_024923	NUP210	0.788673	1.720254e-23	2.980684e-19	1.295949e-20
24	7999769	8052803	NM_014911	AAK1	0.777899	1.653541e-22	2.865090e-18	1.193787e-19
25	7999769	8133275	NM_172020	POM121	0.769768	8.405703e-22	1.456456e-17	5.825825e-19
26	7999769	8025697	NM_012218	ILF3	0.764079	2.521273e-21	4.368609e-17	1.680234e-18
27	7999769	7920000	NM_015100	POGZ	0.761317	4.250172e-21	7.364273e-17	2.727508e-18
28	7999769	8000636	NM_130464	NPIPL3	0.760565	4.893541e-21	8.479039e-17	3.028228e-18
29	7999769	8133610	NM_001013739	STAG3L3	0.759865	5.576637e-21	9.662638e-17	3.331944e-18
30	7999769	8139977	NM_001013739	STAG3L3	0.758795	6.804536e-21	1.179022e-16	3.930073e-18
31	7999769	8118580	NM_005104	BRD2	0.758714	6.907435e-21	1.196851e-16	3.860811e-18
32	7999769	7949146	NM_004630	SF1	0.758261	7.512469e-21	1.301685e-16	4.067767e-18
33	7999769	8128138	NM_014611	MDN1	0.758222	7.567578e-21	1.311234e-16	3.973437e-18
34	7999769	8140196	NM_001025202	STAG3L2	0.757810	8.165439e-21	1.414826e-16	4.161252e-18
35	7999769	8179504	NM_005104	BRD2	0.755296	1.295251e-20	2.244282e-16	6.412233e-18
36	7999769	7992692	NM_016333	SRRM2	0.753279	1.868043e-20	3.236759e-16	8.990996e-18
37	7999769	7972946	NM_007368	RASA3	0.748951	4.049731e-20	7.016969e-16	1.896478e-17
38	7999769	8132819	NM_006060	IKZF1	0.748329	4.520714e-20	7.833042e-16	2.061327e-17
39	7999769	8109528	NM_001037332	CYFIP2	0.746328	6.424206e-20	1.113122e-15	2.854160e-17
40	7999769	8069910	NM_020706	SFRS15	0.746228	6.537289e-20	1.132716e-15	2.831790e-17
41	7999769	8074647	NM_058004	PI4KA	0.742587	1.228647e-19	2.128877e-15	5.192382e-17
42	7999769	8093685	NM_002111	HTT	0.738296	2.549547e-19	4.417599e-15	1.051809e-16
43	7999769	8104378	NM_006999	PAPD7	0.737153	3.089355e-19	5.352925e-15	1.244866e-16
44	7999769	8174692	NM_145799	SEPT6	0.736441	3.480135e-19	6.030030e-15	1.370461e-16
45	7999769	7976876	NM_001376	DYNC1H1	0.736381	3.515524e-19	6.091348e-15	1.353633e-16
46	7999769	8085665	NM_015150	RFTN1	0.733453	5.713617e-19	9.899984e-15	2.152171e-16
47	7999769	8067040	NM_012340	NFATC2	0.732607	6.567642e-19	1.137975e-14	2.421224e-16
48	7999769	7900235	NM_012090	MACF1	0.732132	7.099405e-19	1.230114e-14	2.562737e-16
49	7999769	8087271	NM_017730	QRICH1	0.729723	1.051190e-18	1.821397e-14	3.717137e-16
50	7999769	7912412	NM_004958	MTOR	0.729238	1.137233e-18	1.970484e-14	3.940968e-16

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
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