[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
User requested variable id 14799.
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
14799	7999766	NM_006985	NPIP		nuclear pore complex interacting protein

Fetching correlation data, please wait...
Getting list of correlations for id 14799.
Getting list of p-values for id 14799.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.097 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	7999766	7993580	NM_006985	NPIP	0.988415	3.665556e-86	6.351308e-82	6.351308e-82
2	7999766	8000131	NM_130464	NPIPL3	0.942008	1.197212e-50	2.074410e-46	1.037205e-46
3	7999766	8000205	NM_130464	NPIPL3	0.941502	1.849272e-50	3.204233e-46	1.068078e-46
4	7999766	7994026	NM_130464	NPIPL3	0.940290	5.157019e-50	8.935566e-46	2.233892e-46
5	7999766	8000676	NM_130464	NPIPL3	0.939513	9.836106e-50	1.704302e-45	3.408604e-46
6	7999766	7999769	NM_006985	NPIP	0.910574	2.598463e-41	4.502357e-37	7.503928e-38
7	7999766	7993359	NM_006985	NPIP	0.900404	5.118187e-39	8.868283e-35	1.266898e-35
8	7999766	7993546	NM_006985	NPIP	0.891031	4.117737e-37	7.134803e-33	8.918504e-34
9	7999766	7993349	NM_006985	NPIP	0.887806	1.699715e-36	2.945096e-32	3.272329e-33
10	7999766	7994559	NR_003610	PDXDC2P	0.862015	3.655492e-32	6.333871e-28	6.333871e-29
11	7999766	7997239	NR_003610	PDXDC2P	0.853822	5.734256e-31	9.935745e-27	9.032496e-28
12	7999766	8000501	NR_003610	PDXDC2P	0.849098	2.600813e-30	4.506429e-26	3.755357e-27
13	7999766	8000537	NR_003610	PDXDC2P	0.842511	1.968762e-29	3.411274e-25	2.624057e-26
14	7999766	7993404	NM_006985	NPIP	0.831308	5.016451e-28	8.692005e-24	6.208575e-25
15	7999766	7994371	ENST00000446615		0.815012	3.727440e-26	6.458536e-22	4.305690e-23
16	7999766	8022320	ENST00000446615		0.806386	3.081257e-25	5.338894e-21	3.336809e-22
17	7999766	7944223	NM_005933	MLL	0.756880	9.691478e-21	1.679242e-16	9.877896e-18
18	7999766	8000636	NM_130464	NPIPL3	0.735425	4.122696e-19	7.143395e-15	3.968553e-16
19	7999766	8165686	NC_001807		0.723997	2.628568e-18	4.554520e-14	2.397116e-15
20	7999766	8134470	NM_003496	TRRAP	0.716957	7.864180e-18	1.362626e-13	6.813132e-15
21	7999766	7999634	NM_006985	NPIP	0.712344	1.583956e-17	2.744520e-13	1.306914e-14
22	7999766	7907310	NM_015172	BAT2L2	0.712217	1.614516e-17	2.797471e-13	1.271578e-14
23	7999766	7900235	NM_012090	MACF1	0.696734	1.535110e-16	2.659886e-12	1.156472e-13
24	7999766	7900336	AY527403		0.694611	2.067455e-16	3.582280e-12	1.492617e-13
25	7999766	7920000	NM_015100	POGZ	0.693868	2.293304e-16	3.973607e-12	1.589443e-13
26	7999766	8000156	ENST00000446231		0.693646	2.365125e-16	4.098051e-12	1.576174e-13
27	7999766	7999614	NM_006985	NPIP	0.693295	2.483481e-16	4.303128e-12	1.593751e-13
28	7999766	8158829	NM_013318	BAT2L1	0.690094	3.862334e-16	6.692266e-12	2.390095e-13
29	7999766	8124469	BC171739	GUSBL1	0.687759	5.312003e-16	9.204108e-12	3.173830e-13
30	7999766	8000638	NM_015092	SMG1	0.687220	5.714624e-16	9.901729e-12	3.300576e-13
31	7999766	8000823	NM_015092	SMG1	0.686483	6.314254e-16	1.094071e-11	3.529261e-13
32	7999766	8052803	NM_014911	AAK1	0.681370	1.251257e-15	2.168053e-11	6.775167e-13
33	7999766	8050875	NM_018263	ASXL2	0.680988	1.316203e-15	2.280585e-11	6.910864e-13
34	7999766	8069910	NM_020706	SFRS15	0.680054	1.488841e-15	2.579715e-11	7.587398e-13
35	7999766	8172914	NM_031407	HUWE1	0.680004	1.498671e-15	2.596747e-11	7.419278e-13
36	7999766	8172119	NM_004229	MED14	0.679115	1.684456e-15	2.918657e-11	8.107380e-13
37	7999766	8118580	NM_005104	BRD2	0.677435	2.098329e-15	3.635774e-11	9.826417e-13
38	7999766	7992692	NM_016333	SRRM2	0.674313	3.144867e-15	5.449111e-11	1.433977e-12
39	7999766	8002333	NM_015092	SMG1	0.674136	3.217144e-15	5.574345e-11	1.429319e-12
40	7999766	8043791	NM_001134225	INPP4A	0.671852	4.310860e-15	7.469426e-11	1.867357e-12
41	7999766	8067040	NM_012340	NFATC2	0.670835	4.906706e-15	8.501849e-11	2.073622e-12
42	7999766	8000167	NM_015092	SMG1	0.669296	5.963216e-15	1.033246e-10	2.460110e-12
43	7999766	8179504	NM_005104	BRD2	0.669042	6.158033e-15	1.067002e-10	2.481401e-12
44	7999766	7949146	NM_004630	SF1	0.667964	7.052697e-15	1.222021e-10	2.777320e-12
45	7999766	7994006	NM_015092	SMG1	0.667773	7.224423e-15	1.251776e-10	2.781724e-12
46	7999766	8085665	NM_015150	RFTN1	0.666698	8.266046e-15	1.432258e-10	3.113604e-12
47	7999766	8104378	NM_006999	PAPD7	0.664868	1.038322e-14	1.799101e-10	3.827875e-12
48	7999766	8000834	NM_015092	SMG1	0.663576	1.218598e-14	2.111465e-10	4.398886e-12
49	7999766	8000651	NM_015092	SMG1	0.659211	2.080543e-14	3.604957e-10	7.357055e-12
50	7999766	8139977	NM_001013739	STAG3L3	0.654890	3.502522e-14	6.068820e-10	1.213764e-11

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
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