[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
2341	8015821	NM_004527	MEOX1		mesenchyme homeobox 1

Fetching correlation data, please wait...
Getting list of correlations for id 2341.
Getting list of p-values for id 2341.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.120 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8015821	7908978	NM_014827	ZC3H11A	-0.626517	8.772767e-13	1.520057e-8	1.520057e-8
2	8015821	7949592	NM_004292	RIN1	0.623623	1.196332e-12	2.072884e-8	1.036442e-8
3	8015821	7977674	NM_007192	SUPT16H	-0.603540	9.455873e-12	1.638419e-7	5.461397e-8
4	8015821	8148208	NM_144963	FAM91A1	-0.598961	1.484923e-11	2.572927e-7	6.432317e-8
5	8015821	7898377	NM_014675	CROCC	0.593130	2.611663e-11	4.525228e-7	9.050456e-8
6	8015821	8171786	NM_153270	KLHL34	0.591322	3.104098e-11	5.378471e-7	8.964119e-8
7	8015821	8166956	NM_021140	KDM6A	-0.587180	4.592816e-11	7.957971e-7	1.136853e-7
8	8015821	8045381	NM_058241	CCNT2	-0.585586	5.332413e-11	9.239472e-7	1.154934e-7
9	8015821	7928645	NM_001099338	FAM22A	0.579699	9.191043e-11	1.592532e-6	1.769480e-7
10	8015821	7930454	NM_145341	PDCD4	-0.579066	9.739440e-11	1.687553e-6	1.687553e-7
11	8015821	8162833	NM_015051	ERP44	-0.574591	1.461412e-10	2.532189e-6	2.301990e-7
12	8015821	8031511	NM_153219	ZNF524	0.573888	1.556731e-10	2.697348e-6	2.247790e-7
13	8015821	8042119	NM_022894	PAPOLG	-0.573248	1.648678e-10	2.856664e-6	2.197434e-7
14	8015821	8051670	NM_005633	SOS1	-0.572279	1.797986e-10	3.115370e-6	2.225264e-7
15	8015821	8136065	NR_002144	LOC407835	0.569737	2.253940e-10	3.905403e-6	2.603602e-7
16	8015821	7955578	NM_181711	GRASP	0.569532	2.295183e-10	3.976864e-6	2.485540e-7
17	8015821	8090772	NM_007027	TOPBP1	-0.569370	2.328483e-10	4.034562e-6	2.373272e-7
18	8015821	7928653	NM_001099338	FAM22A	0.569105	2.383664e-10	4.130175e-6	2.294542e-7
19	8015821	8068894	NR_026960	C21orf125	0.568458	2.523740e-10	4.372885e-6	2.301518e-7
20	8015821	8153823	NM_032687	CYHR1	0.567715	2.694249e-10	4.668325e-6	2.334162e-7
21	8015821	8086810	NM_003074	SMARCC1	-0.567680	2.702725e-10	4.683011e-6	2.230005e-7
22	8015821	8022882	NM_006965	ZNF24	-0.567267	2.802630e-10	4.856117e-6	2.207326e-7
23	8015821	8170007	ENST00000330288		0.566995	2.870266e-10	4.973310e-6	2.162309e-7
24	8015821	7965359	NM_001001323	ATP2B1	-0.566067	3.113315e-10	5.394441e-6	2.247684e-7
25	8015821	8095773	NM_003715	USO1	-0.564106	3.693762e-10	6.400181e-6	2.560073e-7
26	8015821	8115941	NM_052899	GPRIN1	0.564011	3.724419e-10	6.453301e-6	2.482039e-7
27	8015821	8064751	NM_015417	SPEF1	0.563146	4.014562e-10	6.956031e-6	2.576308e-7
28	8015821	8002660	NM_017853	TXNL4B	-0.562909	4.097694e-10	7.100074e-6	2.535741e-7
29	8015821	8105681	NM_018695	ERBB2IP	-0.561886	4.476626e-10	7.756650e-6	2.674707e-7
30	8015821	7994052	NM_006043	HS3ST2	0.561208	4.745802e-10	8.223052e-6	2.741017e-7
31	8015821	8014679	NM_025248	SRCIN1	0.561068	4.803548e-10	8.323108e-6	2.684873e-7
32	8015821	7905517	NM_178354	LCE1F	0.560555	5.019966e-10	8.698095e-6	2.718155e-7
33	8015821	8115606	NM_006425	SLU7	-0.560268	5.145173e-10	8.915042e-6	2.701528e-7
34	8015821	8129522	NM_004830	MED23	-0.558557	5.956224e-10	1.032035e-5	3.035397e-7
35	8015821	7907171	NM_003666	BLZF1	-0.558493	5.988915e-10	1.037699e-5	2.964855e-7
36	8015821	7913571	NM_001102398	HNRNPR	-0.558371	6.051224e-10	1.048496e-5	2.912488e-7
37	8015821	8064014	NM_022082	SLC17A9	0.557278	6.641451e-10	1.150764e-5	3.110174e-7
38	8015821	8064111	NM_032957	RTEL1	0.556843	6.890958e-10	1.193996e-5	3.142096e-7
39	8015821	8052024	NM_025133	FBXO11	-0.556568	7.053478e-10	1.222156e-5	3.133734e-7
40	8015821	7931582	NM_152911	PAOX	0.556202	7.275561e-10	1.260636e-5	3.151591e-7
41	8015821	8092933	NM_012287	ACAP2	-0.556126	7.322682e-10	1.268801e-5	3.094637e-7
42	8015821	8138799	NM_014817	TRIL	0.555372	7.804878e-10	1.352351e-5	3.219884e-7
43	8015821	8031815	NM_173632	ZNF776	-0.555012	8.045122e-10	1.393978e-5	3.241810e-7
44	8015821	8120022	NM_001253	CDC5L	-0.554622	8.313991e-10	1.440565e-5	3.274012e-7
45	8015821	7983663	NM_005154	USP8	-0.554288	8.551147e-10	1.481657e-5	3.292572e-7
46	8015821	7949857	NM_181843	NUDT8	0.554248	8.579661e-10	1.486598e-5	3.231735e-7
47	8015821	7955019	NM_152641	ARID2	-0.554138	8.659362e-10	1.500408e-5	3.192357e-7
48	8015821	7939365	NM_014344	FJX1	0.554029	8.739394e-10	1.514275e-5	3.154739e-7
49	8015821	8058024	NM_012433	SF3B1	-0.553519	9.121911e-10	1.580554e-5	3.225620e-7
50	8015821	8054092	NM_015348	TMEM131	-0.553190	9.376777e-10	1.624714e-5	3.249428e-7

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
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	with keyword:
	KEGG Pathway:
Limit output to	rows.
Remove	"self correlations", i.e. correlations of a variable with itself
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