[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
917	8138799	NM_014817	TRIL		TLR4 interactor with leucine rich repeats

Fetching correlation data, please wait...
Getting list of correlations for id 917.
Getting list of p-values for id 917.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.178 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8138799	7992758	NM_172229	KREMEN2	0.781052	8.640566e-23	1.497151e-18	1.497151e-18
2	8138799	7991939	NM_145294	WDR90	0.778354	1.506931e-22	2.611059e-18	1.305530e-18
3	8138799	7995310	ENST00000319817		0.777484	1.799685e-22	3.118315e-18	1.039438e-18
4	8138799	8005328	NM_016239	MYO15A	0.777214	1.901418e-22	3.294587e-18	8.236469e-19
5	8138799	8110872	NM_033267	IRX2	0.774763	3.120957e-22	5.407682e-18	1.081536e-18
6	8138799	8032034	NM_001136263	C2CD4C	0.774339	3.397880e-22	5.887506e-18	9.812511e-19
7	8138799	8153380	NM_001135655	LY6H	0.773947	3.675723e-22	6.368926e-18	9.098465e-19
8	8138799	8026735	NM_133644	GTPBP3	0.773402	4.098065e-22	7.100717e-18	8.875897e-19
9	8138799	8064242	NR_027686	NCRNA00176	0.769361	9.100682e-22	1.576875e-17	1.752083e-18
10	8138799	8026861	NM_014256	B3GNT3	0.768503	1.076007e-21	1.864398e-17	1.864398e-18
11	8138799	8087145	NM_001407	CELSR3	0.767770	1.240578e-21	2.149549e-17	1.954135e-18
12	8138799	8115941	NM_052899	GPRIN1	0.767277	1.364977e-21	2.365096e-17	1.970914e-18
13	8138799	8039504	NM_001145176	SHISA7	0.766756	1.509290e-21	2.615148e-17	2.011652e-18
14	8138799	8156743	NM_004473	FOXE1	0.766276	1.655449e-21	2.868397e-17	2.048855e-18
15	8138799	8148517	NM_001702	BAI1	0.765494	1.923759e-21	3.333296e-17	2.222198e-18
16	8138799	8052018	NM_022055	KCNK12	0.765219	2.027913e-21	3.513765e-17	2.196103e-18
17	8138799	7940022	NM_178570	RTN4RL2	0.765066	2.088103e-21	3.618056e-17	2.128268e-18
18	8138799	8106976	NM_199243	GPR150	0.762229	3.579425e-21	6.202070e-17	3.445594e-18
19	8138799	7989770	NM_004884	IGDCC3	0.761678	3.970951e-21	6.880467e-17	3.621298e-18
20	8138799	7931519	NM_152643	KNDC1	0.761517	4.093032e-21	7.091996e-17	3.545998e-18
21	8138799	8064676	NM_145762	GFRA4	0.759477	5.994475e-21	1.038663e-16	4.946013e-18
22	8138799	8142971	NM_138693	KLF14	0.758535	7.140563e-21	1.237245e-16	5.623842e-18
23	8138799	7986248	AY358245	LOC643797	0.756398	1.058774e-20	1.834538e-16	7.976252e-18
24	8138799	8143941	NM_198285	WDR86	0.755130	1.334998e-20	2.313151e-16	9.638129e-18
25	8138799	7937612	NM_002458	MUC5B	0.754974	1.373520e-20	2.379898e-16	9.519591e-18
26	8138799	8032197	NM_152769	C19orf26	0.754090	1.612868e-20	2.794616e-16	1.074852e-17
27	8138799	7950032	NM_002007	FGF4	0.753759	1.712604e-20	2.967428e-16	1.099047e-17
28	8138799	7911750	NM_001010926	HES5	0.753616	1.757358e-20	3.044974e-16	1.087491e-17
29	8138799	8125234	NM_019105	TNXB	0.753555	1.777118e-20	3.079212e-16	1.061797e-17
30	8138799	7994052	NM_006043	HS3ST2	0.753023	1.956257e-20	3.389606e-16	1.129869e-17
31	8138799	7896779	NM_198317	KLHL17	0.752260	2.244584e-20	3.889191e-16	1.254578e-17
32	8138799	7911435	NM_001014980	FAM132A	0.751120	2.753469e-20	4.770936e-16	1.490917e-17
33	8138799	7992269	ENST00000301714		0.750685	2.975697e-20	5.155989e-16	1.562421e-17
34	8138799	7958577	NM_032829	C12orf34	0.749136	3.919208e-20	6.790811e-16	1.997297e-17
35	8138799	7923372	NM_012396	PHLDA3	0.748915	4.075790e-20	7.062121e-16	2.017749e-17
36	8138799	8027222	NM_153221	CILP2	0.748149	4.666015e-20	8.084805e-16	2.245779e-17
37	8138799	8028806	NM_020971	SPTBN4	0.747613	5.128506e-20	8.886163e-16	2.401666e-17
38	8138799	8133704	NM_001110199	SRRM3	0.747062	5.649588e-20	9.789041e-16	2.576063e-17
39	8138799	8060505	NM_001110514	EBF4	0.746990	5.720767e-20	9.912373e-16	2.541634e-17
40	8138799	8011220	hsa-mir-212		0.746695	6.025096e-20	1.043968e-15	2.609921e-17
41	8138799	7967039	NM_002442	MSI1	0.746183	6.589207e-20	1.141712e-15	2.784663e-17
42	8138799	7935983	NM_005029	PITX3	0.746009	6.792978e-20	1.177019e-15	2.802427e-17
43	8138799	8153862	NM_001024678	LRRC24	0.745766	7.086246e-20	1.227834e-15	2.855428e-17
44	8138799	8159670	NM_006647	NOXA1	0.745192	7.831262e-20	1.356923e-15	3.083916e-17
45	8138799	7934141	NM_022146	NPFFR1	0.744818	8.357843e-20	1.448163e-15	3.218141e-17
46	8138799	8046276	NM_001003845	SP5	0.744318	9.113705e-20	1.579132e-15	3.432895e-17
47	8138799	8137931	NM_001100600	MMD2	0.744297	9.147083e-20	1.584915e-15	3.372160e-17
48	8138799	8013112	NM_016084	RASD1	0.743801	9.967701e-20	1.727104e-15	3.598132e-17
49	8138799	8016168	NM_133373	PLCD3	0.743622	1.027936e-19	1.781104e-15	3.634906e-17
50	8138799	7952893	BC024764	IQSEC3	0.743420	1.064519e-19	1.844493e-15	3.688985e-17

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
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