[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 2 variables:
id	Label1	AccNum	GeneSym	Info	Gene Name
508	8179238	NM_000247	MICA		MHC class I polypeptide-related sequence A
4300	8118100	NM_000247	MICA		MHC class I polypeptide-related sequence A

Fetching correlation data, please wait...
Getting list of correlations for id 508.
Getting list of p-values for id 508.
1 of 2 done.
Getting list of correlations for id 4300.
Getting list of p-values for id 4300.
2 of 2 done.
Calculating corrections for multiple testing (n=34654), please wait...
Done; whole program took 0.200 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8118100	8179238	NM_000247	MICA	0.860617	5.919824e-32	2.051456e-27	2.051456e-27
2	8179238	8118100	NM_000247	MICA	0.860617	5.919824e-32	2.051456e-27	1.025728e-27
3	8118100	8118116	NM_005931	MICB	0.546771	1.596812e-9	5.533592e-5	1.844531e-5
4	8179238	8118116	NM_005931	MICB	0.543529	2.080541e-9	7.209906e-5	1.802476e-5
5	8179238	8012883	NM_006042	HS3ST3A1	-0.525255	8.783862e-9	3.043960e-4	6.087919e-5
6	8179238	8101158	NM_005506	SCARB2	0.496809	7.026816e-8	2.435073e-3	4.058454e-4
7	8179238	8177955	NM_005931	MICB	0.488610	1.236327e-7	4.284369e-3	6.120527e-4
8	8179238	8139859	NM_000181	GUSB	0.480619	2.114423e-7	7.327323e-3	9.159154e-4
9	8179238	8114396	NM_004661	CDC23	0.480533	2.126480e-7	7.369104e-3	8.187894e-4
10	8179238	7968898	BC039586	KIAA1704	0.476771	2.724663e-7	9.442046e-3	9.442046e-4
11	8118100	8012883	NM_006042	HS3ST3A1	-0.475907	2.883096e-7	9.991081e-3	9.082801e-4
12	8118100	8177955	NM_005931	MICB	0.475103	3.038358e-7	1.052913e-2	8.774272e-4
13	8179238	7954071	NR_002774	HTR7P1	-0.474839	3.091004e-7	1.071157e-2	8.239666e-4
14	8179238	7974314	ENST00000364506		0.472622	3.569220e-7	1.236877e-2	8.834839e-4
15	8118100	8119408	NM_002505	NFYA	0.469541	4.351603e-7	1.508005e-2	1.005336e-3
16	8179238	8177046	ENST00000422633		0.469494	4.364713e-7	1.512548e-2	9.453422e-4
17	8179238	8167652	AY730278	CENPVL1	-0.467324	5.012489e-7	1.737028e-2	1.021781e-3
18	8179238	8172715	AY730278	CENPVL1	-0.467324	5.012489e-7	1.737028e-2	9.650156e-4
19	8179238	8118111	NM_006674	HCP5	0.465823	5.513122e-7	1.910517e-2	1.005536e-3
20	8118100	7962893	ENST00000362524		0.465660	5.570076e-7	1.930254e-2	9.651270e-4
21	8179238	8119408	NM_002505	NFYA	0.463892	6.227063e-7	2.157926e-2	1.027584e-3
22	8179238	8086981	NM_033199	UCN2	-0.463808	6.259836e-7	2.169283e-2	9.860379e-4
23	8118100	8140107	NM_032317	DNAJC30	-0.463098	6.545590e-7	2.268309e-2	9.862212e-4
24	8179238	8004497	NM_001416	EIF4A1	0.461795	7.101599e-7	2.460988e-2	1.025412e-3
25	8179238	8086530	NM_015444	TMEM158	-0.461363	7.295639e-7	2.528231e-2	1.011292e-3
26	8118100	8139859	NM_000181	GUSB	0.461088	7.421588e-7	2.571877e-2	9.891835e-4
27	8179238	7935951	NM_024541	C10orf76	0.458239	8.856444e-7	3.069112e-2	1.136708e-3
28	8179238	8008139	NM_023079	UBE2Z	0.457934	9.024739e-7	3.127433e-2	1.116940e-3
29	8179238	8134680	NM_003439	ZKSCAN1	0.455294	1.061409e-6	3.678207e-2	1.268347e-3
30	8118100	8160587	NM_002493	NDUFB6	0.454941	1.084594e-6	3.758551e-2	1.252850e-3
31	8179238	8169920	NM_016024	RBMX2	0.454921	1.085896e-6	3.763064e-2	1.213892e-3
32	8179238	7897078	NM_007033	RER1	0.454193	1.135267e-6	3.934156e-2	1.229424e-3
33	8179238	8070771	NM_198691	KRTAP10-1	-0.452928	1.226033e-6	4.248696e-2	1.287484e-3
34	8179238	8052250	NM_001005369	MTIF2	0.452675	1.245047e-6	4.314588e-2	1.268996e-3
35	8179238	8097670	NM_172250	MMAA	0.452264	1.276425e-6	4.423323e-2	1.263806e-3
36	8179238	8014233	NM_001104587	SLFN11	0.450652	1.407101e-6	4.876169e-2	1.354491e-3
37	8179238	7972912	NM_001014283	DCUN1D2	0.450193	1.446526e-6	5.012790e-2	1.354808e-3
38	8179238	7971550	NM_014166	MED4	0.449886	1.473484e-6	5.106210e-2	1.343740e-3
39	8179238	7990657	NM_144572	TBC1D2B	0.449718	1.488512e-6	5.158291e-2	1.322639e-3
40	8118100	8014233	NM_001104587	SLFN11	0.449085	1.546173e-6	5.358107e-2	1.339527e-3
41	8179238	7981917	NM_018958	C15orf2	-0.448330	1.617643e-6	5.605779e-2	1.367263e-3
42	8179238	8014081	NM_018428	UTP6	0.448210	1.629320e-6	5.646247e-2	1.344344e-3
43	8179238	8063369	NM_018683	RNF114	0.448108	1.639309e-6	5.680863e-2	1.321131e-3
44	8179238	8111129	NM_033414	ZNF622	0.444003	2.092177e-6	7.250229e-2	1.647779e-3
45	8179238	7933075	NM_031866	FZD8	-0.442857	2.238328e-6	7.756702e-2	1.723712e-3
46	8179238	7994237	NM_016309	LCMT1	0.442188	2.327967e-6	8.067338e-2	1.753769e-3
47	8179238	8032232	NM_017573	PCSK4	-0.442099	2.340136e-6	8.109507e-2	1.725427e-3
48	8179238	7982620	NM_001013703	EIF2AK4	0.441589	2.411144e-6	8.355580e-2	1.740746e-3
49	8179238	8002830	NM_153486	LDHD	-0.441462	2.429249e-6	8.418320e-2	1.718025e-3
50	8179238	7925739	ENST00000403423		-0.441431	2.433611e-6	8.433437e-2	1.686687e-3

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
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	with keyword:
	KEGG Pathway:
Limit output to	rows.
Remove	"self correlations", i.e. correlations of a variable with itself
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