[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 2 variables:
id	Label1	AccNum	GeneSym	Info	Gene Name
11083	8167652	AY730278	CENPVL1		centromere protein V-like 1
11084	8172715	AY730278	CENPVL1		centromere protein V-like 1

Fetching correlation data, please wait...
Getting list of correlations for id 11083.
Getting list of p-values for id 11083.
1 of 2 done.
Getting list of correlations for id 11084.
Getting list of p-values for id 11084.
2 of 2 done.
Calculating corrections for multiple testing (n=34654), please wait...
Done; whole program took 0.243 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8172715	8167652	AY730278	CENPVL1	1.000000	0.000000e+0	0.000000e+0	0.000000e+0
2	8167652	8172715	AY730278	CENPVL1	1.000000	0.000000e+0	0.000000e+0	0.000000e+0
3	8172715	8036252	NM_015526	CLIP3	0.836129	1.283079e-28	4.446382e-24	1.482127e-24
4	8167652	8036252	NM_015526	CLIP3	0.836129	1.283079e-28	4.446382e-24	1.111596e-24
5	8172715	7991877	NM_005632	SOLH	0.831268	5.073421e-28	1.758143e-23	3.516287e-24
6	8167652	7991877	NM_005632	SOLH	0.831268	5.073421e-28	1.758143e-23	2.930239e-24
7	8172715	8013259	ENST00000300983		0.821113	7.821709e-27	2.710535e-22	3.872193e-23
8	8167652	8013259	ENST00000300983		0.821113	7.821709e-27	2.710535e-22	3.388169e-23
9	8167652	8030181	NM_033378	CGB2	0.817331	2.072900e-26	7.183427e-22	7.981586e-23
10	8172715	8030181	NM_033378	CGB2	0.817331	2.072900e-26	7.183427e-22	7.183427e-23
11	8172715	8049598	NM_194312	ESPNL	0.817159	2.165869e-26	7.505603e-22	6.823275e-23
12	8167652	8049598	NM_194312	ESPNL	0.817159	2.165869e-26	7.505603e-22	6.254669e-23
13	8172715	7995193	NM_024742	ARMC5	0.814828	3.903951e-26	1.352875e-21	1.040673e-22
14	8167652	7995193	NM_024742	ARMC5	0.814828	3.903951e-26	1.352875e-21	9.663395e-23
15	8172715	7969935	NM_000123	ERCC5	-0.814319	4.434426e-26	1.536706e-21	1.024471e-22
16	8167652	7969935	NM_000123	ERCC5	-0.814319	4.434426e-26	1.536706e-21	9.604413e-23
17	8172715	7905020	NM_000798	DRD5	0.813269	5.762343e-26	1.996882e-21	1.174637e-22
18	8167652	7905020	NM_000798	DRD5	0.813269	5.762343e-26	1.996882e-21	1.109379e-22
19	8167652	8055021	NM_017969	IWS1	-0.812686	6.659583e-26	2.307812e-21	1.214638e-22
20	8172715	8055021	NM_017969	IWS1	-0.812686	6.659583e-26	2.307812e-21	1.153906e-22
21	8172715	8074384	NM_005315	GSC2	0.812082	7.732661e-26	2.679676e-21	1.276036e-22
22	8167652	8074384	NM_005315	GSC2	0.812082	7.732661e-26	2.679676e-21	1.218035e-22
23	8172715	7980463	NM_012245	SNW1	-0.810042	1.275552e-25	4.420296e-21	1.921868e-22
24	8167652	7980463	NM_012245	SNW1	-0.810042	1.275552e-25	4.420296e-21	1.841790e-22
25	8172715	7968931	NM_031431	COG3	-0.809804	1.351548e-25	4.683655e-21	1.873462e-22
26	8167652	7968931	NM_031431	COG3	-0.809804	1.351548e-25	4.683655e-21	1.801406e-22
27	8172715	8148674	NM_139021	MAPK15	0.809052	1.622584e-25	5.622901e-21	2.082556e-22
28	8167652	8148674	NM_139021	MAPK15	0.809052	1.622584e-25	5.622901e-21	2.008179e-22
29	8172715	7991459	NM_020211	RGMA	0.808860	1.699964e-25	5.891055e-21	2.031398e-22
30	8167652	7991459	NM_020211	RGMA	0.808860	1.699964e-25	5.891055e-21	1.963685e-22
31	8167652	8171867	NM_139058	ARX	0.807125	2.581804e-25	8.946982e-21	2.886123e-22
32	8172715	8171867	NM_139058	ARX	0.807125	2.581804e-25	8.946982e-21	2.795932e-22
33	8167652	8074131	NM_001080420	SHANK3	0.805739	3.594909e-25	1.245780e-20	3.775090e-22
34	8172715	8074131	NM_001080420	SHANK3	0.805739	3.594909e-25	1.245780e-20	3.664058e-22
35	8172715	8078435	NM_001039111	TRIM71	0.805156	4.127790e-25	1.430444e-20	4.086984e-22
36	8167652	8078435	NM_001039111	TRIM71	0.805156	4.127790e-25	1.430444e-20	3.973457e-22
37	8167652	7971550	NM_014166	MED4	-0.804434	4.896778e-25	1.696930e-20	4.586296e-22
38	8172715	7971550	NM_014166	MED4	-0.804434	4.896778e-25	1.696930e-20	4.465604e-22
39	8172715	8101324	NM_031370	HNRNPD	-0.803429	6.203390e-25	2.149723e-20	5.512110e-22
40	8167652	8101324	NM_031370	HNRNPD	-0.803429	6.203390e-25	2.149723e-20	5.374307e-22
41	8167652	8049952	NM_173821	C2orf85	0.803340	6.333925e-25	2.194958e-20	5.353557e-22
42	8172715	8049952	NM_173821	C2orf85	0.803340	6.333925e-25	2.194958e-20	5.226091e-22
43	8172715	8121209	NM_005604	POU3F2	0.803108	6.688433e-25	2.317809e-20	5.390255e-22
44	8167652	8121209	NM_005604	POU3F2	0.803108	6.688433e-25	2.317809e-20	5.267749e-22
45	8167652	8158554	NM_016307	PRRX2	0.802453	7.795307e-25	2.701386e-20	6.003079e-22
46	8172715	8158554	NM_016307	PRRX2	0.802453	7.795307e-25	2.701386e-20	5.872577e-22
47	8167652	8034940	NM_000435	NOTCH3	0.802390	7.909529e-25	2.740968e-20	5.831847e-22
48	8172715	8034940	NM_000435	NOTCH3	0.802390	7.909529e-25	2.740968e-20	5.710351e-22
49	8172715	8006148	NM_004871	GOSR1	-0.800985	1.096397e-24	3.799455e-20	7.753989e-22
50	8167652	8006148	NM_004871	GOSR1	-0.800985	1.096397e-24	3.799455e-20	7.598909e-22

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
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