[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
3535	8154635	NM_002451	MTAP		methylthioadenosine phosphorylase

Fetching correlation data, please wait...
Getting list of correlations for id 3535.
Getting list of p-values for id 3535.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.118 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8154635	7925130	NM_005646	TARBP1	0.715286	1.015106e-17	1.758874e-13	1.758874e-13
2	8154635	7902476	BX537792	FAM73A	0.712127	1.636462e-17	2.835497e-13	1.417748e-13
3	8154635	8050367	NM_015909	NBAS	0.711581	1.776150e-17	3.077535e-13	1.025845e-13
4	8154635	7995421	NM_031490	LONP2	0.705717	4.230494e-17	7.330176e-13	1.832544e-13
5	8154635	7925364	NM_018072	HEATR1	0.704429	5.103880e-17	8.843493e-13	1.768699e-13
6	8154635	7969881	NM_003291	TPP2	0.701819	7.444907e-17	1.289979e-12	2.149965e-13
7	8154635	8041149	NM_015131	WDR43	0.701127	8.222420e-17	1.424699e-12	2.035284e-13
8	8154635	7966462	NM_024953	NAA25	0.697806	1.319528e-16	2.286346e-12	2.857932e-13
9	8154635	8101701	NM_152542	PPM1K	0.694735	2.032125e-16	3.521062e-12	3.912291e-13
10	8154635	7909545	NM_145759	TRAF5	0.693516	2.408327e-16	4.172908e-12	4.172908e-13
11	8154635	7968898	BC039586	KIAA1704	0.691906	3.010241e-16	5.215844e-12	4.741677e-13
12	8154635	7901804	NM_176877	INADL	0.691356	3.247552e-16	5.627033e-12	4.689194e-13
13	8154635	8086077	NM_015097	CLASP2	0.688928	4.530437e-16	7.849888e-12	6.038376e-13
14	8154635	8130038	NM_001042683	SHPRH	0.686855	6.004804e-16	1.040452e-11	7.431802e-13
15	8154635	8059413	NM_014689	DOCK10	0.686499	6.300945e-16	1.091765e-11	7.278432e-13
16	8154635	8120883	NM_015018	DOPEY1	0.684055	8.753006e-16	1.516633e-11	9.478958e-13
17	8154635	7970704	NM_152912	MTIF3	0.683601	9.300368e-16	1.611475e-11	9.479264e-13
18	8154635	8139592	NM_004507	HUS1	0.683526	9.393810e-16	1.627665e-11	9.042586e-13
19	8154635	7996860	NM_024562	TMCO7	0.683181	9.836810e-16	1.704424e-11	8.970653e-13
20	8154635	8106025	NM_018429	BDP1	0.682519	1.074292e-15	1.861426e-11	9.307130e-13
21	8154635	8128767	NM_014797	ZBTB24	0.681185	1.282251e-15	2.221756e-11	1.057979e-12
22	8154635	8177560	NM_018429	BDP1	0.678606	1.800666e-15	3.120014e-11	1.418188e-12
23	8154635	8023165	NM_032124	HDHD2	0.677354	2.120784e-15	3.674683e-11	1.597688e-12
24	8154635	8107942	NM_005732	RAD50	0.676587	2.343354e-15	4.060329e-11	1.691804e-12
25	8154635	8041592	NM_019063	EML4	0.676154	2.478710e-15	4.294861e-11	1.717944e-12
26	8154635	8020630	NM_153211	TTC39C	0.675922	2.554589e-15	4.426336e-11	1.702437e-12
27	8154635	7975292	NM_002877	RAD51L1	0.674744	2.974787e-15	5.154413e-11	1.909042e-12
28	8154635	8136293	NM_021807	EXOC4	0.673080	3.684530e-15	6.384186e-11	2.280066e-12
29	8154635	8091354	NM_003071	HLTF	0.672630	3.903158e-15	6.763001e-11	2.332069e-12
30	8154635	8007904	NM_004287	GOSR2	0.671323	4.611946e-15	7.991118e-11	2.663706e-12
31	8154635	8043251	NM_017952	PTCD3	0.671279	4.637497e-15	8.035391e-11	2.592062e-12
32	8154635	8017150	NM_016261	TUBD1	0.669030	6.167160e-15	1.068584e-10	3.339324e-12
33	8154635	8147156	NM_007013	WWP1	0.668444	6.639848e-15	1.150486e-10	3.486322e-12
34	8154635	8154316	NM_152896	UHRF2	0.667380	7.589449e-15	1.315024e-10	3.867717e-12
35	8154635	7971246	NM_015058	KIAA0564	0.666629	8.337802e-15	1.444691e-10	4.127688e-12
36	8154635	8122409	NM_003630	PEX3	0.666141	8.861679e-15	1.535463e-10	4.265175e-12
37	8154635	8055060	NM_018383	WDR33	0.665619	9.457265e-15	1.638660e-10	4.428812e-12
38	8154635	8102730	NM_152778	MFSD8	0.665011	1.020056e-14	1.767451e-10	4.651188e-12
39	8154635	8027416	NM_003796	C19orf2	0.664402	1.100133e-14	1.906201e-10	4.887696e-12
40	8154635	8107750	NM_130809	PRRC1	0.664375	1.103880e-14	1.912693e-10	4.781732e-12
41	8154635	7970473	NM_022459	XPO4	0.663366	1.250582e-14	2.166884e-10	5.285083e-12
42	8154635	8066303	NM_032221	CHD6	0.662210	1.441960e-14	2.498484e-10	5.948772e-12
43	8154635	7957890	NM_014503	UTP20	0.662106	1.460561e-14	2.530715e-10	5.885383e-12
44	8154635	8154793	NM_002504	NFX1	0.661666	1.541538e-14	2.671022e-10	6.070505e-12
45	8154635	8078173	NM_138381	OXNAD1	0.661372	1.598092e-14	2.769013e-10	6.153363e-12
46	8154635	8105612	NM_005869	CWC27	0.660699	1.735426e-14	3.006972e-10	6.536897e-12
47	8154635	8017283	NR_026641	INTS2	0.660497	1.778730e-14	3.082006e-10	6.557459e-12
48	8154635	8027439	NM_001136156	ZNF507	0.659928	1.906628e-14	3.303614e-10	6.882529e-12
49	8154635	8087748	NM_014703	VPRBP	0.659707	1.958707e-14	3.393852e-10	6.926229e-12
50	8154635	8163023	NM_003640	IKBKAP	0.659690	1.962694e-14	3.400760e-10	6.801519e-12

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
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