[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
4725	7937560	NM_002457	MUC2		mucin 2, oligomeric mucus/gel-forming

Fetching correlation data, please wait...
Getting list of correlations for id 4725.
Getting list of p-values for id 4725.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.142 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	7937560	8067409	NM_005560	LAMA5	0.887838	1.676246e-36	2.904432e-32	2.904432e-32
2	7937560	8156783	NM_001855	COL15A1	0.879094	6.363730e-35	1.102644e-30	5.513218e-31
3	7937560	8028407	NM_000540	RYR1	0.877604	1.149813e-34	1.992280e-30	6.640934e-31
4	7937560	8049942	NM_080741	NEU4	0.871824	1.062653e-33	1.841259e-29	4.603147e-30
5	7937560	8153101	NM_152888	COL22A1	0.871480	1.209089e-33	2.094989e-29	4.189978e-30
6	7937560	7913450	NM_005529	HSPG2	0.868379	3.802904e-33	6.589291e-29	1.098215e-29
7	7937560	8150928	NM_003580	NSMAF	-0.868028	4.321536e-33	7.487925e-29	1.069704e-29
8	7937560	8005328	NM_016239	MYO15A	0.864055	1.791866e-32	3.104766e-28	3.880957e-29
9	7937560	8024605	NM_021938	CELF5	0.863761	1.987442e-32	3.443641e-28	3.826268e-29
10	7937560	8110821	NM_001044	SLC6A3	0.863535	2.151781e-32	3.728391e-28	3.728391e-29
11	7937560	8033487	NM_032447	FBN3	0.862399	3.199850e-32	5.544380e-28	5.040346e-29
12	7937560	8115691	NM_003062	SLIT3	0.861298	4.684316e-32	8.116514e-28	6.763762e-29
13	7937560	8039362	NM_178837	C19orf51	0.860943	5.292718e-32	9.170692e-28	7.054378e-29
14	7937560	7987701	NM_016642	SPTBN5	0.860806	5.547910e-32	9.612863e-28	6.866331e-29
15	7937560	7952893	BC024764	IQSEC3	0.859370	9.060979e-32	1.569996e-27	1.046664e-28
16	7937560	8159670	NM_006647	NOXA1	0.858987	1.031647e-31	1.787535e-27	1.117210e-28
17	7937560	8110688	NM_004174	SLC9A3	0.858915	1.057123e-31	1.831677e-27	1.077457e-28
18	7937560	8037732	NM_001029861	NANOS2	0.856687	2.233433e-31	3.869869e-27	2.149927e-28
19	7937560	7923360	NM_003281	TNNI1	0.853971	5.462783e-31	9.465365e-27	4.981771e-28
20	7937560	8121209	NM_005604	POU3F2	0.853844	5.693632e-31	9.865356e-27	4.932678e-28
21	7937560	8114550	NM_004883	NRG2	0.850888	1.475733e-30	2.557002e-26	1.217620e-27
22	7937560	7936882	NM_001146340	NKX1-2	0.849955	1.984679e-30	3.438854e-26	1.563116e-27
23	7937560	7927307	NM_001630	ANXA8L2	0.848916	2.754251e-30	4.772290e-26	2.074909e-27
24	7937560	8001014	NM_173502	PRSS36	0.848268	3.374886e-30	5.847666e-26	2.436527e-27
25	7937560	7970241	NM_000504	F10	0.848052	3.610249e-30	6.255478e-26	2.502191e-27
26	7937560	8024306	NM_005883	APC2	0.848039	3.625285e-30	6.281531e-26	2.415973e-27
27	7937560	7955305	NM_001652	AQP6	0.847770	3.942487e-30	6.831148e-26	2.530055e-27
28	7937560	8093440	NM_001004356	FGFRL1	0.847712	4.014275e-30	6.955534e-26	2.484119e-27
29	7937560	8064242	NR_027686	NCRNA00176	0.847611	4.141930e-30	7.176721e-26	2.474731e-27
30	7937560	8060604	NM_000915	OXT	0.847528	4.251031e-30	7.365761e-26	2.455254e-27
31	7937560	7945688	NR_003512	INS-IGF2	0.847444	4.362812e-30	7.559445e-26	2.438531e-27
32	7937560	7920744	NM_000298	PKLR	0.846803	5.323321e-30	9.223719e-26	2.882412e-27
33	7937560	7992845	NM_003456	ZNF205	0.845332	8.370478e-30	1.450353e-25	4.395008e-27
34	7937560	7992758	NM_172229	KREMEN2	0.845152	8.844171e-30	1.532430e-25	4.507146e-27
35	7937560	8125805	NM_000841	GRM4	0.845129	8.907752e-30	1.543446e-25	4.409846e-27
36	7937560	7897066	NR_024445	LOC100128003	0.844947	9.417141e-30	1.631708e-25	4.532522e-27
37	7937560	8060660	NM_052970	HSPA12B	0.844412	1.108499e-29	1.920696e-25	5.191071e-27
38	7937560	7927367	NM_001040084	ANXA8	0.844160	1.196593e-29	2.073337e-25	5.456149e-27
39	7937560	8032312	NM_138813	ATP8B3	0.843679	1.384535e-29	2.398984e-25	6.151242e-27
40	7937560	8163548	NM_138424	KIF12	0.843376	1.517615e-29	2.629571e-25	6.573927e-27
41	7937560	8131056	NM_017781	CYP2W1	0.843247	1.577553e-29	2.733425e-25	6.666891e-27
42	7937560	7949080	NM_015080	NRXN2	0.842350	2.066343e-29	3.580353e-25	8.524650e-27
43	7937560	8018379	NM_020753	CASKIN2	0.841716	2.498075e-29	4.328415e-25	1.006608e-26
44	7937560	8159036	NM_139025	ADAMTS13	0.840576	3.505893e-29	6.074661e-25	1.380605e-26
45	7937560	8096556	NM_015143	METAP1	-0.839349	5.035558e-29	8.725111e-25	1.938914e-26
46	7937560	8016168	NM_133373	PLCD3	0.839213	5.239790e-29	9.078985e-25	1.973692e-26
47	7937560	8073941	ENST00000411210		0.839162	5.319077e-29	9.216365e-25	1.960929e-26
48	7937560	8000467	NM_001109763	GSG1L	0.839100	5.417469e-29	9.386849e-25	1.955594e-26
49	7937560	7992147	NM_021098	CACNA1H	0.839031	5.526712e-29	9.576133e-25	1.954313e-26
50	7937560	7903632	NM_001408	CELSR2	0.838515	6.428399e-29	1.113849e-24	2.227697e-26

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
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	with keyword:
	KEGG Pathway:
Limit output to	rows.
Remove	"self correlations", i.e. correlations of a variable with itself
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