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Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Search Options: Find correlations between...
Gene/Label/Number: and (Empty also means "all others")
Output Options
Restrict output to miRs, Transcription factors? (Empty: No restrictions.)
  with keyword:
 KEGG Pathway:
Limit output to rows.
Remove "self correlations", i.e. correlations of a variable with itself
Sort results by positive, negative or absolute value of correlation
Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id Label1 AccNum GeneSym Info Gene Name
3529 8090098 NM_053025 MYLK link to infopage myosin light chain kinase

Fetching correlation data, please wait...
Getting list of correlations for id 3529.
Getting list of p-values for id 3529.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.095 seconds. Transmitting 50 results:

Column legend:

Rank Label1 Label2 AccNum GeneSym Info Pearson r Raw p Bonferroni FDR (BH)
1 8090098 7942204 NM_005231 CTTN link to infopage 0.765469 1.933077e-21 3.349442e-17 3.349442e-17
2 8090098 8085393 NM_018306 TMEM40 link to infopage 0.749899 3.423273e-20 5.931505e-16 2.965752e-16
3 8090098 7991602 NM_002570 PCSK6 link to infopage 0.714562 1.133237e-17 1.963559e-13 6.545197e-14
4 8090098 8041383 NM_206943 LTBP1 link to infopage 0.707435 3.287812e-17 5.696792e-13 1.424198e-13
5 8090098 8090162 NM_002213 ITGB5 link to infopage 0.700321 9.228674e-17 1.599052e-12 3.198105e-13
6 8090098 8057797 NM_004657 SDPR link to infopage 0.694505 2.098292e-16 3.635711e-12 6.059518e-13
7 8090098 8116818 NM_001718 BMP6 link to infopage 0.691969 2.984209e-16 5.170740e-12 7.386771e-13
8 8090098 8118249 NM_138277 C6orf25 link to infopage 0.691512 3.178245e-16 5.506944e-12 6.883680e-13
9 8090098 8149927 NM_001831 CLU link to infopage 0.683750 9.117062e-16 1.579713e-11 1.755237e-12
10 8090098 8179313 NM_138277 C6orf25 link to infopage 0.679432 1.615820e-15 2.799731e-11 2.799731e-12
11 8090098 7944876 NM_006176 NRGN link to infopage 0.678943 1.722859e-15 2.985198e-11 2.713816e-12
12 8090098 7922200 NM_003005 SELP link to infopage 0.671558 4.475840e-15 7.755287e-11 6.462740e-12
13 8090098 8178074 NM_138277 C6orf25 link to infopage 0.668772 6.370815e-15 1.103871e-10 8.491316e-12
14 8090098 8004221 NM_000697 ALOX12 link to infopage 0.665727 9.331300e-15 1.616834e-10 1.154882e-11
15 8090098 8078650 NM_001008392 CTDSPL link to infopage 0.664176 1.131439e-14 1.960444e-10 1.306963e-11
16 8090098 8126269 NM_178174 TREML1 link to infopage 0.658438 2.285025e-14 3.959263e-10 2.474539e-11
17 8090098 8071147 NM_018943 TUBA8 link to infopage 0.658073 2.388246e-14 4.138113e-10 2.434184e-11
18 8090098 7924996 NM_032800 C1orf198 link to infopage 0.652746 4.521352e-14 7.834146e-10 4.352303e-11
19 8090098 8178063 NM_001003693 LY6G6F link to infopage 0.648335 7.596746e-14 1.316288e-9 6.927832e-11
20 8090098 8118235 NM_001003693 LY6G6F link to infopage 0.648335 7.596746e-14 1.316288e-9 6.581441e-11
21 8090098 8041225 NM_014600 EHD3 link to infopage 0.642899 1.423421e-13 2.466361e-9 1.174458e-10
22 8090098 8171848 NM_004845 PCYT1B link to infopage 0.642686 1.458481e-13 2.527109e-9 1.148686e-10
23 8090098 8071671 NM_002073 GNAZ link to infopage 0.637233 2.702982e-13 4.683457e-9 2.036285e-10
24 8090098 8073662 NM_001003828 PARVB link to infopage 0.634915 3.500275e-13 6.064926e-9 2.527053e-10
25 8090098 8103695 NM_021647 MFAP3L link to infopage 0.632875 4.386879e-13 7.601145e-9 3.040458e-10
26 8090098 8016044 NM_000419 ITGA2B link to infopage 0.625780 9.496697e-13 1.645493e-8 6.328818e-10
27 8090098 8063716 NM_030773 TUBB1 link to infopage 0.622020 1.418706e-12 2.458191e-8 9.104413e-10
28 8090098 8115327 NM_003118 SPARC link to infopage 0.616213 2.609397e-12 4.521302e-8 1.614751e-9
29 8090098 7900683 NM_005373 MPL link to infopage 0.607529 6.343722e-12 1.099177e-7 3.790265e-9
30 8090098 7973403 NM_138460 CMTM5 link to infopage 0.606045 7.364185e-12 1.275992e-7 4.253308e-9
31 8090098 8090433 NM_007283 MGLL link to infopage 0.601581 1.147952e-11 1.989056e-7 6.416309e-9
32 8090098 8158939 NM_004188 GFI1B link to infopage 0.600739 1.247255e-11 2.161118e-7 6.753495e-9
33 8090098 8042283 NM_014181 HSPC159 link to infopage 0.591204 3.139284e-11 5.439437e-7 1.648314e-8
34 8090098 7907370 NM_015569 DNM3 link to infopage 0.590280 3.427563e-11 5.938939e-7 1.746747e-8
35 8090098 8120833 NM_031469 SH3BGRL2 link to infopage 0.581477 7.806904e-11 1.352702e-6 3.864864e-8
36 8090098 7952436 NM_138961 ESAM link to infopage 0.580818 8.294459e-11 1.437181e-6 3.992169e-8
37 8090098 7960642 NM_032489 ACRBP link to infopage 0.578028 1.070593e-10 1.855017e-6 5.013560e-8
38 8090098 8157650 NM_000962 PTGS1 link to infopage 0.575021 1.405824e-10 2.435872e-6 6.410189e-8
39 8090098 8071234 NM_002688 SEPT5 link to infopage 0.564668 3.517538e-10 6.094838e-6 1.562779e-7
40 8090098 8102532 NM_001083 PDE5A link to infopage 0.564533 3.559113e-10 6.166875e-6 1.541719e-7
41 8090098 8062312 NM_006097 MYL9 link to infopage 0.560178 5.185207e-10 8.984408e-6 2.191319e-7
42 8090098 8071259 NM_002688 SEPT5 link to infopage 0.559812 5.350243e-10 9.270366e-6 2.207230e-7
43 8090098 8136067 NM_178562 TSPAN33 link to infopage 0.556847 6.888611e-10 1.193590e-5 2.775790e-7
44 8090098 8071268 NM_000407 GP1BB link to infopage 0.555356 7.815238e-10 1.354146e-5 3.077605e-7
45 8090098 8007931 NM_000212 ITGB3 link to infopage 0.553213 9.358756e-10 1.621592e-5 3.603537e-7
46 8090098 8134257 NM_004126 GNG11 link to infopage 0.548674 1.365276e-9 2.365614e-5 5.142639e-7
47 8090098 8004024 NM_000173 GP1BA link to infopage 0.546387 1.647845e-9 2.855222e-5 6.074939e-7
48 8090098 8170119 NM_001159702 FHL1 link to infopage 0.542308 2.296889e-9 3.979819e-5 8.291290e-7
49 8090098 8066513 NM_002999 SDC4 link to infopage 0.541784 2.396226e-9 4.151940e-5 8.473348e-7
50 8090098 7943293 NM_015036 ENDOD1 link to infopage 0.536061 3.787075e-9 6.561865e-5 1.312373e-6

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

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