[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
2519	8170119	NM_001159702	FHL1		four and a half LIM domains 1

Fetching correlation data, please wait...
Getting list of correlations for id 2519.
Getting list of p-values for id 2519.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.124 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8170119	8118249	NM_138277	C6orf25	0.630518	5.682660e-13	9.846346e-9	9.846346e-9
2	8170119	8071671	NM_002073	GNAZ	0.613962	3.293798e-12	5.707164e-8	2.853582e-8
3	8170119	8179313	NM_138277	C6orf25	0.612058	4.005187e-12	6.939787e-8	2.313262e-8
4	8170119	8073662	NM_001003828	PARVB	0.606570	6.986317e-12	1.210519e-7	3.026298e-8
5	8170119	8126269	NM_178174	TREML1	0.605368	7.880266e-12	1.365414e-7	2.730827e-8
6	8170119	8090162	NM_002213	ITGB5	0.602848	1.012755e-11	1.754801e-7	2.924668e-8
7	8170119	8016044	NM_000419	ITGA2B	0.601382	1.170806e-11	2.028656e-7	2.898080e-8
8	8170119	8062312	NM_006097	MYL9	0.590004	3.518343e-11	6.096234e-7	7.620292e-8
9	8170119	8041383	NM_206943	LTBP1	0.589288	3.765079e-11	6.523752e-7	7.248613e-8
10	8170119	7900683	NM_005373	MPL	0.582920	6.832565e-11	1.183879e-6	1.183879e-7
11	8170119	8004221	NM_000697	ALOX12	0.579750	9.148246e-11	1.585117e-6	1.441015e-7
12	8170119	8136067	NM_178562	TSPAN33	0.574312	1.498536e-10	2.596513e-6	2.163761e-7
13	8170119	8149927	NM_001831	CLU	0.569708	2.259861e-10	3.915661e-6	3.012047e-7
14	8170119	7942204	NM_005231	CTTN	0.568810	2.446571e-10	4.239173e-6	3.027981e-7
15	8170119	7924996	NM_032800	C1orf198	0.559168	5.653442e-10	9.795719e-6	6.530479e-7
16	8170119	7991602	NM_002570	PCSK6	0.555779	7.540542e-10	1.306550e-5	8.165936e-7
17	8170119	8004024	NM_000173	GP1BA	0.554831	8.168841e-10	1.415415e-5	8.325971e-7
18	8170119	7922200	NM_003005	SELP	0.546935	1.575472e-9	2.729820e-5	1.516567e-6
19	8170119	8090098	NM_053025	MYLK	0.542308	2.296889e-9	3.979819e-5	2.094642e-6
20	8170119	7944876	NM_006176	NRGN	0.541849	2.383563e-9	4.130000e-5	2.065000e-6
21	8170119	8178074	NM_138277	C6orf25	0.541101	2.531893e-9	4.387011e-5	2.089053e-6
22	8170119	8157650	NM_000962	PTGS1	0.539951	2.777089e-9	4.811862e-5	2.187210e-6
23	8170119	8007931	NM_000212	ITGB3	0.532910	4.854702e-9	8.411742e-5	3.657279e-6
24	8170119	8071147	NM_018943	TUBA8	0.522540	1.080184e-8	1.871635e-4	7.798477e-6
25	8170119	8057797	NM_004657	SDPR	0.520588	1.251942e-8	2.169240e-4	8.676961e-6
26	8170119	8041225	NM_014600	EHD3	0.518798	1.432130e-8	2.481451e-4	9.544043e-6
27	8170119	7967358	NM_020845	PITPNM2	0.510004	2.742358e-8	4.751684e-4	1.759883e-5
28	8170119	8061227	NM_020689	SLC24A3	0.503853	4.273319e-8	7.404380e-4	2.644421e-5
29	8170119	8078650	NM_001008392	CTDSPL	0.501048	5.216093e-8	9.037924e-4	3.116525e-5
30	8170119	8102321	NM_030821	PLA2G12A	0.500904	5.269524e-8	9.130503e-4	3.043501e-5
31	8170119	7973403	NM_138460	CMTM5	0.491221	1.034402e-7	1.792308e-3	5.781638e-5
32	8170119	8089015	NM_000313	PROS1	0.485928	1.482533e-7	2.568785e-3	8.027454e-5
33	8170119	8008454	NM_003786	ABCC3	0.485033	1.574639e-7	2.728376e-3	8.267807e-5
34	8170119	8063716	NM_030773	TUBB1	0.481570	1.985060e-7	3.439513e-3	1.011622e-4
35	8170119	8097973	NM_000857	GUCY1B3	0.481256	2.026962e-7	3.512116e-3	1.003462e-4
36	8170119	8071234	NM_002688	SEPT5	0.479708	2.245851e-7	3.891386e-3	1.080940e-4
37	8170119	7899153	NM_031286	SH3BGRL3	0.475676	2.926880e-7	5.071406e-3	1.370650e-4
38	8170119	8118235	NM_001003693	LY6G6F	0.474955	3.067817e-7	5.315607e-3	1.398844e-4
39	8170119	8178063	NM_001003693	LY6G6F	0.474955	3.067817e-7	5.315607e-3	1.362976e-4
40	8170119	8082473	NM_000174	GP9	0.474711	3.116917e-7	5.400682e-3	1.350171e-4
41	8170119	8036103	NM_198538	SBSN	0.472954	3.493270e-7	6.052788e-3	1.476290e-4
42	8170119	7952436	NM_138961	ESAM	0.470049	4.212095e-7	7.298297e-3	1.737690e-4
43	8170119	8039294	NM_001083899	GP6	0.467132	5.074205e-7	8.792075e-3	2.044669e-4
44	8170119	8115327	NM_003118	SPARC	0.465097	5.771748e-7	1.000071e-2	2.272888e-4
45	8170119	8071268	NM_000407	GP1BB	0.461258	7.343665e-7	1.272437e-2	2.827637e-4
46	8170119	7941148	NM_003273	TM7SF2	0.456253	1.000820e-6	1.734121e-2	3.769827e-4
47	8170119	8090433	NM_007283	MGLL	0.453525	1.182363e-6	2.048681e-2	4.358896e-4
48	8170119	8085393	NM_018306	TMEM40	0.449997	1.463686e-6	2.536129e-2	5.283603e-4
49	8170119	7988859	NM_006578	GNB5	0.442946	2.226616e-6	3.858058e-2	7.873587e-4
50	8170119	8164692	AF467069	RAPGEF1	-0.442448	2.292684e-6	3.972533e-2	7.945066e-4

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
Restrict output to	miRs, Transcription factors? (Empty: No restrictions.)
	with keyword:
	KEGG Pathway:
Limit output to	rows.
Remove	"self correlations", i.e. correlations of a variable with itself
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