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Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Search Options: Find correlations between...
Gene/Label/Number: and (Empty also means "all others")
Output Options
Restrict output to miRs, Transcription factors? (Empty: No restrictions.)
  with keyword:
 KEGG Pathway:
Limit output to rows.
Remove "self correlations", i.e. correlations of a variable with itself
Sort results by positive, negative or absolute value of correlation
Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id Label1 AccNum GeneSym Info Gene Name
4506 8008454 NM_003786 ABCC3 link to infopage ATP-binding cassette, sub-family C (CFTR/MRP), member 3

Fetching correlation data, please wait...
Getting list of correlations for id 4506.
Getting list of p-values for id 4506.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.121 seconds. Transmitting 50 results:

Column legend:

Rank Label1 Label2 AccNum GeneSym Info Pearson r Raw p Bonferroni FDR (BH)
1 8008454 8071671 NM_002073 GNAZ link to infopage 0.657212 2.650189e-14 4.591983e-10 4.591983e-10
2 8008454 8179313 NM_138277 C6orf25 link to infopage 0.650145 6.146445e-14 1.064995e-9 5.324973e-10
3 8008454 8118249 NM_138277 C6orf25 link to infopage 0.637936 2.498090e-13 4.328440e-9 1.442813e-9
4 8008454 8004221 NM_000697 ALOX12 link to infopage 0.627114 8.225567e-13 1.425244e-8 3.563110e-9
5 8008454 8039294 NM_001083899 GP6 link to infopage 0.623451 1.218393e-12 2.111109e-8 4.222219e-9
6 8008454 8178074 NM_138277 C6orf25 link to infopage 0.613707 3.381406e-12 5.858962e-8 9.764936e-9
7 8008454 8073662 NM_001003828 PARVB link to infopage 0.611996 4.030575e-12 6.983777e-8 9.976824e-9
8 8008454 8149927 NM_001831 CLU link to infopage 0.605100 8.094726e-12 1.402573e-7 1.753216e-8
9 8008454 8118235 NM_001003693 LY6G6F link to infopage 0.601986 1.102938e-11 1.911061e-7 2.123401e-8
10 8008454 8178063 NM_001003693 LY6G6F link to infopage 0.601986 1.102938e-11 1.911061e-7 1.911061e-8
11 8008454 7944876 NM_006176 NRGN link to infopage 0.593269 2.577117e-11 4.465371e-7 4.059428e-8
12 8008454 8082473 NM_000174 GP9 link to infopage 0.590633 3.314313e-11 5.742711e-7 4.785592e-8
13 8008454 8016044 NM_000419 ITGA2B link to infopage 0.585207 5.524519e-11 9.572334e-7 7.363334e-8
14 8008454 8109093 NM_014945 ABLIM3 link to infopage 0.581162 8.036083e-11 1.392412e-6 9.945800e-8
15 8008454 7942204 NM_005231 CTTN link to infopage 0.580607 8.457269e-11 1.465391e-6 9.769273e-8
16 8008454 8062312 NM_006097 MYL9 link to infopage 0.574071 1.531284e-10 2.653256e-6 1.658285e-7
17 8008454 8071234 NM_002688 SEPT5 link to infopage 0.573041 1.679569e-10 2.910189e-6 1.711876e-7
18 8008454 8126269 NM_178174 TREML1 link to infopage 0.571444 1.937024e-10 3.356281e-6 1.864601e-7
19 8008454 7905746 NM_080429 AQP10 link to infopage 0.562994 4.067908e-10 7.048464e-6 3.709718e-7
20 8008454 8071259 NM_002688 SEPT5 link to infopage 0.560474 5.054927e-10 8.758672e-6 4.379336e-7
21 8008454 7973403 NM_138460 CMTM5 link to infopage 0.557716 6.398633e-10 1.108691e-5 5.279482e-7
22 8008454 8090162 NM_002213 ITGB5 link to infopage 0.555173 7.936610e-10 1.375176e-5 6.250802e-7
23 8008454 8041383 NM_206943 LTBP1 link to infopage 0.552725 9.749167e-10 1.689238e-5 7.344514e-7
24 8008454 8158939 NM_004188 GFI1B link to infopage 0.544742 1.884979e-9 3.266104e-5 1.360877e-6
25 8008454 8071268 NM_000407 GP1BB link to infopage 0.542672 2.230214e-9 3.864292e-5 1.545717e-6
26 8008454 8057797 NM_004657 SDPR link to infopage 0.539655 2.843759e-9 4.927381e-5 1.895146e-6
27 8008454 8078650 NM_001008392 CTDSPL link to infopage 0.538488 3.122198e-9 5.409833e-5 2.003642e-6
28 8008454 8004024 NM_000173 GP1BA link to infopage 0.537165 3.469422e-9 6.011467e-5 2.146953e-6
29 8008454 8157650 NM_000962 PTGS1 link to infopage 0.535759 3.878733e-9 6.720680e-5 2.317476e-6
30 8008454 7900683 NM_005373 MPL link to infopage 0.532292 5.095553e-9 8.829064e-5 2.943021e-6
31 8008454 8090098 NM_053025 MYLK link to infopage 0.529222 6.471970e-9 1.121398e-4 3.617414e-6
32 8008454 7922200 NM_003005 SELP link to infopage 0.527644 7.311277e-9 1.266825e-4 3.958828e-6
33 8008454 8061227 NM_020689 SLC24A3 link to infopage 0.521199 1.195533e-8 2.071500e-4 6.277274e-6
34 8008454 7952436 NM_138961 ESAM link to infopage 0.521094 1.205029e-8 2.087954e-4 6.141040e-6
35 8008454 8071147 NM_018943 TUBA8 link to infopage 0.519919 1.316587e-8 2.281250e-4 6.517857e-6
36 8008454 7991602 NM_002570 PCSK6 link to infopage 0.511822 2.401285e-8 4.160706e-4 1.155752e-5
37 8008454 7970716 NM_153371 LNX2 link to infopage -0.500808 5.305458e-8 9.192768e-4 2.484532e-5
38 8008454 8094876 NM_021927 GUF1 link to infopage -0.499851 5.676509e-8 9.835687e-4 2.588339e-5
39 8008454 8171545 NM_153346 BEND2 link to infopage 0.497634 6.633211e-8 1.149336e-3 2.947017e-5
40 8008454 8007931 NM_000212 ITGB3 link to infopage 0.495761 7.559404e-8 1.309818e-3 3.274545e-5
41 8008454 8090433 NM_007283 MGLL link to infopage 0.490797 1.064905e-7 1.845161e-3 4.500392e-5
42 8008454 8108403 NM_199189 MATR3 link to infopage -0.489722 1.146084e-7 1.985819e-3 4.728141e-5
43 8008454 8131871 NM_138771 CCDC126 link to infopage -0.488206 1.270737e-7 2.201805e-3 5.120477e-5
44 8008454 8170119 NM_001159702 FHL1 link to infopage 0.485033 1.574639e-7 2.728376e-3 6.200856e-5
45 8008454 7971661 hsa-mir-15a link to infopage -0.484117 1.674620e-7 2.901614e-3 6.448031e-5
46 8008454 7988970 NM_019600 KIAA1370 link to infopage -0.482047 1.923028e-7 3.332030e-3 7.243543e-5
47 8008454 8116818 NM_001718 BMP6 link to infopage 0.479863 2.223031e-7 3.851845e-3 8.195415e-5
48 8008454 8161509 NM_004477 FRG1 link to infopage -0.477807 2.545736e-7 4.410996e-3 9.189576e-5
49 8008454 8097973 NM_000857 GUCY1B3 link to infopage 0.475752 2.912562e-7 5.046596e-3 1.029918e-4
50 8008454 8095694 NM_002620 PF4V1 link to infopage 0.475091 3.040744e-7 5.268697e-3 1.053739e-4

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

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