[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 2 variables:
id	Label1	AccNum	GeneSym	Info	Gene Name
2151	8118235	NM_001003693	LY6G6F		lymphocyte antigen 6 complex, locus G6F
2152	8178063	NM_001003693	LY6G6F		lymphocyte antigen 6 complex, locus G6F

Fetching correlation data, please wait...
Getting list of correlations for id 2151.
Getting list of p-values for id 2151.
1 of 2 done.
Getting list of correlations for id 2152.
Getting list of p-values for id 2152.
2 of 2 done.
Calculating corrections for multiple testing (n=34654), please wait...
Done; whole program took 0.162 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8178063	8118235	NM_001003693	LY6G6F	1.000000	0.000000e+0	0.000000e+0	0.000000e+0
2	8118235	8178063	NM_001003693	LY6G6F	1.000000	0.000000e+0	0.000000e+0	0.000000e+0
3	8118235	8179313	NM_138277	C6orf25	0.678169	1.906720e-15	6.607549e-11	2.202516e-11
4	8178063	8179313	NM_138277	C6orf25	0.678169	1.906720e-15	6.607549e-11	1.651887e-11
5	8118235	7991602	NM_002570	PCSK6	0.671515	4.500545e-15	1.559619e-10	3.119238e-11
6	8178063	7991602	NM_002570	PCSK6	0.671515	4.500545e-15	1.559619e-10	2.599365e-11
7	8118235	8118249	NM_138277	C6orf25	0.665892	9.141330e-15	3.167837e-10	4.525481e-11
8	8178063	8118249	NM_138277	C6orf25	0.665892	9.141330e-15	3.167837e-10	3.959796e-11
9	8178063	8178074	NM_138277	C6orf25	0.661395	1.593730e-14	5.522913e-10	6.136570e-11
10	8118235	8178074	NM_138277	C6orf25	0.661395	1.593730e-14	5.522913e-10	5.522913e-11
11	8178063	7973403	NM_138460	CMTM5	0.657251	2.637672e-14	9.140589e-10	8.309626e-11
12	8118235	7973403	NM_138460	CMTM5	0.657251	2.637672e-14	9.140589e-10	7.617157e-11
13	8118235	8090098	NM_053025	MYLK	0.648335	7.596746e-14	2.632576e-9	2.025059e-10
14	8178063	8090098	NM_053025	MYLK	0.648335	7.596746e-14	2.632576e-9	1.880412e-10
15	8118235	8082473	NM_000174	GP9	0.644763	1.149261e-13	3.982650e-9	2.655100e-10
16	8178063	8082473	NM_000174	GP9	0.644763	1.149261e-13	3.982650e-9	2.489156e-10
17	8118235	8073662	NM_001003828	PARVB	0.632422	4.611111e-13	1.597935e-8	9.399615e-10
18	8178063	8073662	NM_001003828	PARVB	0.632422	4.611111e-13	1.597935e-8	8.877414e-10
19	8178063	8039294	NM_001083899	GP6	0.628051	7.432062e-13	2.575507e-8	1.355530e-9
20	8118235	8039294	NM_001083899	GP6	0.628051	7.432062e-13	2.575507e-8	1.287753e-9
21	8178063	7942204	NM_005231	CTTN	0.625416	9.874742e-13	3.421993e-8	1.629521e-9
22	8118235	7942204	NM_005231	CTTN	0.625416	9.874742e-13	3.421993e-8	1.555451e-9
23	8118235	8126269	NM_178174	TREML1	0.624815	1.053167e-12	3.649646e-8	1.586803e-9
24	8178063	8126269	NM_178174	TREML1	0.624815	1.053167e-12	3.649646e-8	1.520686e-9
25	8118235	8078650	NM_001008392	CTDSPL	0.615261	2.880141e-12	9.980842e-8	3.992337e-9
26	8178063	8078650	NM_001008392	CTDSPL	0.615261	2.880141e-12	9.980842e-8	3.838785e-9
27	8178063	8071259	NM_002688	SEPT5	0.607384	6.437479e-12	2.230844e-7	8.262385e-9
28	8118235	8071259	NM_002688	SEPT5	0.607384	6.437479e-12	2.230844e-7	7.967300e-9
29	8118235	8016044	NM_000419	ITGA2B	0.604009	9.024630e-12	3.127395e-7	1.078412e-8
30	8178063	8016044	NM_000419	ITGA2B	0.604009	9.024630e-12	3.127395e-7	1.042465e-8
31	8118235	8008454	NM_003786	ABCC3	0.601986	1.102938e-11	3.822122e-7	1.232943e-8
32	8178063	8008454	NM_003786	ABCC3	0.601986	1.102938e-11	3.822122e-7	1.194413e-8
33	8178063	8149927	NM_001831	CLU	0.598546	1.546480e-11	5.359172e-7	1.623991e-8
34	8118235	8149927	NM_001831	CLU	0.598546	1.546480e-11	5.359172e-7	1.576227e-8
35	8118235	8071671	NM_002073	GNAZ	0.592993	2.646171e-11	9.170043e-7	2.620012e-8
36	8178063	8071671	NM_002073	GNAZ	0.592993	2.646171e-11	9.170043e-7	2.547234e-8
37	8178063	8090162	NM_002213	ITGB5	0.588333	4.120441e-11	1.427898e-6	3.859183e-8
38	8118235	8090162	NM_002213	ITGB5	0.588333	4.120441e-11	1.427898e-6	3.757625e-8
39	8118235	8085393	NM_018306	TMEM40	0.581130	8.059801e-11	2.793043e-6	7.161650e-8
40	8178063	8085393	NM_018306	TMEM40	0.581130	8.059801e-11	2.793043e-6	6.982609e-8
41	8178063	8071147	NM_018943	TUBA8	0.580245	8.743120e-11	3.029841e-6	7.389856e-8
42	8118235	8071147	NM_018943	TUBA8	0.580245	8.743120e-11	3.029841e-6	7.213907e-8
43	8178063	8109093	NM_014945	ABLIM3	0.577783	1.094770e-10	3.793817e-6	8.822830e-8
44	8118235	8109093	NM_014945	ABLIM3	0.577783	1.094770e-10	3.793817e-6	8.622311e-8
45	8118235	8041383	NM_206943	LTBP1	0.571667	1.898900e-10	6.580448e-6	1.462322e-7
46	8178063	8041383	NM_206943	LTBP1	0.571667	1.898900e-10	6.580448e-6	1.430532e-7
47	8178063	7900683	NM_005373	MPL	0.571618	1.907212e-10	6.609251e-6	1.406224e-7
48	8118235	7900683	NM_005373	MPL	0.571618	1.907212e-10	6.609251e-6	1.376927e-7
49	8178063	7944876	NM_006176	NRGN	0.561258	4.725325e-10	1.637514e-5	3.341866e-7
50	8118235	7944876	NM_006176	NRGN	0.561258	4.725325e-10	1.637514e-5	3.275028e-7

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
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	KEGG Pathway:
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