[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
5029	8057480	NM_002500	NEUROD1		neurogenic differentiation 1

Fetching correlation data, please wait...
Getting list of correlations for id 5029.
Getting list of p-values for id 5029.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.132 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8057480	7929840	NM_003987	PAX2	0.792629	7.248045e-24	1.255869e-19	1.255869e-19
2	8057480	7914667	NM_052896	CSMD2	0.774744	3.132451e-22	5.427598e-18	2.713799e-18
3	8057480	7990244	NM_005477	HCN4	0.769819	8.321929e-22	1.441941e-17	4.806469e-18
4	8057480	7936762	NM_001001976	ATE1	-0.769813	8.331163e-22	1.443541e-17	3.608852e-18
5	8057480	8111216	ENST00000426411		0.766759	1.508576e-21	2.613909e-17	5.227818e-18
6	8057480	7987701	NM_016642	SPTBN5	0.765861	1.793038e-21	3.106797e-17	5.177996e-18
7	8057480	7992845	NM_003456	ZNF205	0.761210	4.336329e-21	7.513558e-17	1.073365e-17
8	8057480	8067521	NM_080473	GATA5	0.760166	5.272794e-21	9.136170e-17	1.142021e-17
9	8057480	7913450	NM_005529	HSPG2	0.760067	5.371079e-21	9.306468e-17	1.034052e-17
10	8057480	7970241	NM_000504	F10	0.759912	5.528571e-21	9.579356e-17	9.579356e-18
11	8057480	8104281	NM_182632	SLC6A18	0.758124	7.705811e-21	1.335186e-16	1.213805e-17
12	8057480	8066451	NM_182970	RIMS4	0.757675	8.371105e-21	1.450461e-16	1.208718e-17
13	8057480	8033674	NM_024690	MUC16	0.755778	1.186019e-20	2.055015e-16	1.580781e-17
14	8057480	8080142	ENST00000411318		0.752871	2.010461e-20	3.483526e-16	2.488233e-17
15	8057480	7955184	NM_006262	PRPH	0.752558	2.127278e-20	3.685935e-16	2.457290e-17
16	8057480	8114068	NM_133456	SHROOM1	0.752202	2.267943e-20	3.929664e-16	2.456040e-17
17	8057480	7937560	NM_002457	MUC2	0.751478	2.582409e-20	4.474540e-16	2.632082e-17
18	8057480	7903632	NM_001408	CELSR2	0.751123	2.751980e-20	4.768355e-16	2.649086e-17
19	8057480	8008372	NM_017957	EPN3	0.750265	3.207443e-20	5.557536e-16	2.925019e-17
20	8057480	7992147	NM_021098	CACNA1H	0.749978	3.375118e-20	5.848067e-16	2.924033e-17
21	8057480	7962625	NM_001098531	RAPGEF3	0.749729	3.527832e-20	6.112675e-16	2.910798e-17
22	8057480	8031157	NM_020659	TTYH1	0.749494	3.678074e-20	6.372998e-16	2.896817e-17
23	8057480	8061529	NM_014012	REM1	0.748723	4.216648e-20	7.306185e-16	3.176602e-17
24	8057480	8036883	NM_144685	HIPK4	0.748709	4.227032e-20	7.324179e-16	3.051741e-17
25	8057480	8110821	NM_001044	SLC6A3	0.747939	4.842308e-20	8.390268e-16	3.356107e-17
26	8057480	7996516	NM_015432	PLEKHG4	0.747691	5.058473e-20	8.764816e-16	3.371083e-17
27	8057480	7928189	NM_170744	UNC5B	0.747252	5.463906e-20	9.467310e-16	3.506411e-17
28	8057480	8138474	NM_198956	SP8	0.746323	6.429656e-20	1.114066e-15	3.978809e-17
29	8057480	8037563	NM_006663	PPP1R13L	0.746172	6.601285e-20	1.143805e-15	3.944154e-17
30	8057480	7942717	NM_000260	MYO7A	0.745277	7.715923e-20	1.336938e-15	4.456460e-17
31	8057480	8056041			0.745074	7.993191e-20	1.384980e-15	4.467678e-17
32	8057480	8100902	NM_032217	ANKRD17	-0.744556	8.746550e-20	1.515515e-15	4.735984e-17
33	8057480	8023984	NM_001194	HCN2	0.744124	9.425092e-20	1.633086e-15	4.948744e-17
34	8057480	7927367	NM_001040084	ANXA8	0.744031	9.578240e-20	1.659622e-15	4.881240e-17
35	8057480	8169806			0.743930	9.746404e-20	1.688759e-15	4.825027e-17
36	8057480	8032037	NM_012435	SHC2	0.743768	1.002427e-19	1.736905e-15	4.824735e-17
37	8057480	8025053	NM_003811	TNFSF9	0.742745	1.195729e-19	2.071839e-15	5.599566e-17
38	8057480	7927307	NM_001630	ANXA8L2	0.741302	1.531059e-19	2.652865e-15	6.981224e-17
39	8057480	7976322	NM_001275	CHGA	0.741294	1.533076e-19	2.656360e-15	6.811181e-17
40	8057480	8064277	NM_004535	MYT1	0.741043	1.600285e-19	2.772813e-15	6.932033e-17
41	8057480	8038288	NM_033377	CGB1	0.740899	1.640147e-19	2.841883e-15	6.931422e-17
42	8057480	7945550	NM_018494	LRDD	0.740660	1.708352e-19	2.960061e-15	7.047765e-17
43	8057480	8036072	NM_207392	KRTDAP	0.740284	1.821154e-19	3.155514e-15	7.338404e-17
44	8057480	8028719	NM_016941	DLL3	0.739950	1.927320e-19	3.339468e-15	7.589700e-17
45	8057480	8030067	NM_004605	SULT2B1	0.739750	1.993948e-19	3.454913e-15	7.677585e-17
46	8057480	7945162	NM_003658	BARX2	0.738932	2.290233e-19	3.968286e-15	8.626709e-17
47	8057480	7911941	NM_015557	CHD5	0.738083	2.642765e-19	4.579119e-15	9.742806e-17
48	8057480	7920552	NM_002249	KCNN3	0.738020	2.670952e-19	4.627958e-15	9.641579e-17
49	8057480	8115849			0.737932	2.710557e-19	4.696581e-15	9.584860e-17
50	8057480	8159734	NM_000718	CACNA1B	0.737700	2.818203e-19	4.883100e-15	9.766199e-17

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
Restrict output to	miRs, Transcription factors? (Empty: No restrictions.)
	with keyword:
	KEGG Pathway:
Limit output to	rows.
Remove	"self correlations", i.e. correlations of a variable with itself
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