[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
2227	7906501	NM_000702	ATP1A2		ATPase, Na+/K+ transporting, alpha 2 polypeptide

Fetching correlation data, please wait...
Getting list of correlations for id 2227.
Getting list of p-values for id 2227.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.137 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	7906501	8007363	NM_032387	WNK4	0.793546	5.916770e-24	1.025199e-19	1.025199e-19
2	7906501	8005328	NM_016239	MYO15A	0.787952	2.009824e-23	3.482423e-19	1.741211e-19
3	7906501	7998668	NM_144603	NOXO1	0.782239	6.749850e-23	1.169546e-18	3.898488e-19
4	7906501	8049942	NM_080741	NEU4	0.778339	1.511427e-22	2.618849e-18	6.547124e-19
5	7906501	8073449	NM_014460	CSDC2	0.777708	1.719268e-22	2.978976e-18	5.957953e-19
6	7906501	8075016	NM_207644	C22orf36	0.773910	3.702725e-22	6.415712e-18	1.069285e-18
7	7906501	8137330	ENST00000356058		0.768369	1.104452e-21	1.913684e-17	2.733834e-18
8	7906501	7913450	NM_005529	HSPG2	0.766468	1.595433e-21	2.764407e-17	3.455509e-18
9	7906501	8156783	NM_001855	COL15A1	0.766372	1.625413e-21	2.816352e-17	3.129280e-18
10	7906501	8028407	NM_000540	RYR1	0.766098	1.713332e-21	2.968690e-17	2.968690e-18
11	7906501	7953150	NM_003213	TEAD4	0.765193	2.037980e-21	3.531209e-17	3.210190e-18
12	7906501	7936882	NM_001146340	NKX1-2	0.764226	2.451565e-21	4.247827e-17	3.539856e-18
13	7906501	8155942	NM_001013735	FOXB2	0.761442	4.151735e-21	7.193711e-17	5.533624e-18
14	7906501	7992379	NM_001010865	EME2	0.760735	4.739970e-21	8.212945e-17	5.866389e-18
15	7906501	8053022	NM_001965	EGR4	0.758947	6.615348e-21	1.146241e-16	7.641609e-18
16	7906501	8164853	NM_020469	ABO	0.758732	6.884384e-21	1.192857e-16	7.455357e-18
17	7906501	8031084	NM_031895	CACNG8	0.757374	8.849980e-21	1.533436e-16	9.020212e-18
18	7906501	8033462	NM_206833	CTXN1	0.755326	1.288205e-20	2.232072e-16	1.240040e-17
19	7906501	7992758	NM_172229	KREMEN2	0.753924	1.662264e-20	2.880205e-16	1.515897e-17
20	7906501	7997801	NM_013278	IL17C	0.753507	1.792585e-20	3.106012e-16	1.553006e-17
21	7906501	8052018	NM_022055	KCNK12	0.753490	1.797975e-20	3.115352e-16	1.483501e-17
22	7906501	8039362	NM_178837	C19orf51	0.752967	1.976259e-20	3.424263e-16	1.556483e-17
23	7906501	7923360	NM_003281	TNNI1	0.752844	2.020343e-20	3.500649e-16	1.522021e-17
24	7906501	8111216	ENST00000426411		0.752326	2.217851e-20	3.842870e-16	1.601196e-17
25	7906501	7911435	NM_001014980	FAM132A	0.752103	2.308696e-20	4.000277e-16	1.600111e-17
26	7906501	7995193	NM_024742	ARMC5	0.751732	2.467553e-20	4.275529e-16	1.644434e-17
27	7906501	8048628	NM_001005209	TMEM198	0.751347	2.643916e-20	4.581113e-16	1.696708e-17
28	7906501	7935983	NM_005029	PITX3	0.751116	2.755529e-20	4.774506e-16	1.705181e-17
29	7906501	8059783	NM_019850	NGEF	0.751066	2.779931e-20	4.816787e-16	1.660961e-17
30	7906501	7912004	NM_207370	GPR153	0.750521	3.064157e-20	5.309265e-16	1.769755e-17
31	7906501	8024048	NM_002777	PRTN3	0.749628	3.591860e-20	6.223616e-16	2.007618e-17
32	7906501	7937560	NM_002457	MUC2	0.748560	4.339531e-20	7.519106e-16	2.349721e-17
33	7906501	8121209	NM_005604	POU3F2	0.748311	4.534939e-20	7.857688e-16	2.381118e-17
34	7906501	7924465	NM_024746	HHIPL2	0.748305	4.539306e-20	7.865256e-16	2.313311e-17
35	7906501	7952893	BC024764	IQSEC3	0.747592	5.147081e-20	8.918347e-16	2.548099e-17
36	7906501	8086540	NM_020208	SLC6A20	0.747536	5.197816e-20	9.006255e-16	2.501738e-17
37	7906501	7987701	NM_016642	SPTBN5	0.747111	5.601252e-20	9.705290e-16	2.623051e-17
38	7906501	7985159	NM_004378	CRABP1	0.747103	5.609135e-20	9.718948e-16	2.557618e-17
39	7906501	7903632	NM_001408	CELSR2	0.747026	5.684779e-20	9.850016e-16	2.525645e-17
40	7906501	8153346	NM_023946	LYNX1	0.745044	8.035276e-20	1.392272e-15	3.480681e-17
41	7906501	7896822	NM_198576	AGRN	0.744918	8.213047e-20	1.423075e-15	3.470914e-17
42	7906501	8075211	NM_001007279	RASL10A	0.744688	8.548413e-20	1.481184e-15	3.526628e-17
43	7906501	8029950	NM_014601	EHD2	0.744585	8.701721e-20	1.507747e-15	3.506389e-17
44	7906501	7998724	NM_020764	CASKIN1	0.744329	9.097001e-20	1.576237e-15	3.582358e-17
45	7906501	7997264	NM_001906	CTRB1	0.744044	9.556677e-20	1.655885e-15	3.679745e-17
46	7906501	8003939	NM_003963	TM4SF5	0.743785	9.994328e-20	1.731717e-15	3.764602e-17
47	7906501	7898431	NM_016233	PADI3	0.743580	1.035533e-19	1.794269e-15	3.817593e-17
48	7906501	8016168	NM_133373	PLCD3	0.743467	1.055840e-19	1.829454e-15	3.811362e-17
49	7906501	8107897	NM_003687	PDLIM4	0.743392	1.069598e-19	1.853293e-15	3.782230e-17
50	7906501	8032699	NM_015174	ZFR2	0.743314	1.084088e-19	1.878399e-15	3.756797e-17

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
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	with keyword:
	KEGG Pathway:
Limit output to	rows.
Remove	"self correlations", i.e. correlations of a variable with itself
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