[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
6893	7918869	NM_002506	NGF		nerve growth factor (beta polypeptide)

Fetching correlation data, please wait...
Getting list of correlations for id 6893.
Getting list of p-values for id 6893.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.140 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	7918869	7982282	ENST00000410778		0.798040	2.155080e-24	3.734107e-20	3.734107e-20
2	7918869	7982307	ENST00000410778		0.798040	2.155080e-24	3.734107e-20	1.867053e-20
3	7918869	7982267	ENST00000459113		0.790464	1.166053e-23	2.020421e-19	6.734736e-20
4	7918869	7982228	ENST00000459172		0.783417	5.273377e-23	9.137180e-19	2.284295e-19
5	7918869	7982250	ENST00000459172		0.783417	5.273377e-23	9.137180e-19	1.827436e-19
6	7918869	7987112	ENST00000459172		0.783417	5.273377e-23	9.137180e-19	1.522863e-19
7	7918869	7995348			0.780275	1.014957e-22	1.758615e-18	2.512308e-19
8	7918869	7986945	ENST00000459172		0.774129	3.543972e-22	6.140640e-18	7.675800e-19
9	7918869	7987046	ENST00000459113		0.772219	5.185182e-22	8.984366e-18	9.982629e-19
10	7918869	7987137	ENST00000459113		0.772219	5.185182e-22	8.984366e-18	8.984366e-19
11	7918869	7982356	ENST00000459113		0.772219	5.185182e-22	8.984366e-18	8.167605e-19
12	7918869	7995336			0.771784	5.652126e-22	9.793438e-18	8.161198e-19
13	7918869	7995342			0.757998	7.886902e-21	1.366563e-16	1.051203e-17
14	7918869	8031999	NM_003712	PPAP2C	0.756887	9.678920e-21	1.677066e-16	1.197905e-17
15	7918869	7950490	hsa-mir-326		0.748946	4.053592e-20	7.023660e-16	4.682440e-17
16	7918869	8104499	ENST00000296657		0.732926	6.231317e-19	1.079700e-14	6.748127e-16
17	7918869	8150433	NM_152568	NKX6-3	0.730308	9.560697e-19	1.656582e-14	9.744600e-16
18	7918869	7928870	ENST00000363306		0.729439	1.100734e-18	1.907241e-14	1.059578e-15
19	7918869	7995330			0.728832	1.214329e-18	2.104069e-14	1.107405e-15
20	7918869	8035646	NM_023002	HAPLN4	0.727260	1.563622e-18	2.709288e-14	1.354644e-15
21	7918869	8086985	NM_000094	COL7A1	0.724968	2.254038e-18	3.905571e-14	1.859796e-15
22	7918869	8157383	NM_032888	COL27A1	0.723704	2.753022e-18	4.770161e-14	2.168255e-15
23	7918869	8104592	NM_012304	FBXL7	0.721516	3.882751e-18	6.727642e-14	2.925062e-15
24	7918869	7995324			0.719467	5.341340e-18	9.254940e-14	3.856225e-15
25	7918869	8073623	NM_001044370	MPPED1	0.717266	7.500091e-18	1.299541e-13	5.198163e-15
26	7918869	7991104			0.717255	7.512506e-18	1.301692e-13	5.006507e-15
27	7918869	7991169			0.717255	7.512506e-18	1.301692e-13	4.821081e-15
28	7918869	8176159	NM_020994	CTAG2	0.713713	1.288625e-17	2.232800e-13	7.974287e-15
29	7918869	8019334	NM_178493	NOTUM	0.710623	2.049675e-17	3.551472e-13	1.224645e-14
30	7918869	7995352			0.706688	3.669423e-17	6.358009e-13	2.119336e-14
31	7918869	8067506	BC137326	C20orf151	0.706126	3.984523e-17	6.903984e-13	2.227091e-14
32	7918869	7959880	ENST00000459050		0.705305	4.492516e-17	7.784183e-13	2.432557e-14
33	7918869	8177191	ENST00000391106		0.703609	5.749132e-17	9.961520e-13	3.018643e-14
34	7918869	8176667	ENST00000391106		0.703609	5.749132e-17	9.961520e-13	2.929859e-14
35	7918869	7995338			0.702823	6.441272e-17	1.116079e-12	3.188798e-14
36	7918869	7901746			0.697490	1.379860e-16	2.390884e-12	6.641343e-14
37	7918869	7945652	NM_001012708	KRTAP5-3	0.691049	3.387540e-16	5.869590e-12	1.586376e-13
38	7918869	8066590	NM_003279	TNNC2	0.687760	5.311479e-16	9.203200e-12	2.421895e-13
39	7918869	8033825	NM_015719	COL5A3	0.684707	8.020646e-16	1.389737e-11	3.563429e-13
40	7918869	8040290	ENST00000364740		0.682591	1.064091e-15	1.843751e-11	4.609376e-13
41	7918869	8005726	NM_021012	KCNJ12	0.680741	1.359742e-15	2.356025e-11	5.746401e-13
42	7918869	8011912	NM_014336	AIPL1	0.679937	1.511917e-15	2.619698e-11	6.237377e-13
43	7918869	8067867	ENST00000364942		0.679833	1.532853e-15	2.655974e-11	6.176684e-13
44	7918869	7991714			0.677820	1.995522e-15	3.457641e-11	7.858276e-13
45	7918869	8006865	NM_032192	PPP1R1B	0.677376	2.114588e-15	3.663946e-11	8.142102e-13
46	7918869	7932862	ENST00000410143		0.677359	2.119200e-15	3.671938e-11	7.982475e-13
47	7918869	8162998	ENST00000452046		0.676931	2.240775e-15	3.882592e-11	8.260833e-13
48	7918869	8168567	NM_000307	POU3F4	0.676509	2.367058e-15	4.101401e-11	8.544585e-13
49	7918869	8014865	NM_006160	NEUROD2	0.675867	2.572687e-15	4.457696e-11	9.097338e-13
50	7918869	8079167	NM_001145030	C3orf77	0.675075	2.850365e-15	4.938828e-11	9.877656e-13

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
Restrict output to	miRs, Transcription factors? (Empty: No restrictions.)
	with keyword:
	KEGG Pathway:
Limit output to	rows.
Remove	"self correlations", i.e. correlations of a variable with itself
Sort results by	positive, negative or absolute value of correlation