[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
631	8038305	NM_006179	NTF4		neurotrophin 4

Fetching correlation data, please wait...
Getting list of correlations for id 631.
Getting list of p-values for id 631.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.115 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8038305	8142405			0.572673	1.735722e-10	3.007486e-6	3.007486e-6
2	8038305	7984588	NM_024817	THSD4	0.567239	2.809481e-10	4.867988e-6	2.433994e-6
3	8038305	8067588	AL117533	NCRNA00029	0.556333	7.195308e-10	1.246731e-5	4.155770e-6
4	8038305	8050702	NM_004881	TP53I3	0.556315	7.206485e-10	1.248668e-5	3.121669e-6
5	8038305	8132858			0.553863	8.862275e-10	1.535566e-5	3.071133e-6
6	8038305	7931582	NM_152911	PAOX	0.551365	1.092151e-9	1.892370e-5	3.153950e-6
7	8038305	8025278	NM_020415	RETN	0.546827	1.589466e-9	2.754067e-5	3.934381e-6
8	8038305	7950195	hsa-mir-139		0.544280	1.957265e-9	3.391354e-5	4.239192e-6
9	8038305	7946228	NM_000391	TPP1	-0.543845	2.027855e-9	3.513664e-5	3.904071e-6
10	8038305	7995336			0.543222	2.133048e-9	3.695932e-5	3.695932e-6
11	8038305	8066590	NM_003279	TNNC2	0.537357	3.416747e-9	5.920197e-5	5.381997e-6
12	8038305	7967707	ENST00000363646		0.535482	3.964771e-9	6.869758e-5	5.724798e-6
13	8038305	8120273	ENST00000384181		0.527314	7.499820e-9	1.299494e-4	9.996106e-6
14	8038305	8003926	NM_001136046	ZMYND15	0.526948	7.714084e-9	1.336619e-4	9.547281e-6
15	8038305	8024728	NM_170678	ITGB1BP3	0.525802	8.423327e-9	1.459510e-4	9.730066e-6
16	8038305	8027352			-0.525799	8.425247e-9	1.459842e-4	9.124016e-6
17	8038305	8108199	NM_145282	SLC25A48	0.524407	9.371819e-9	1.623855e-4	9.552089e-6
18	8038305	8064245	NM_198723	TCEA2	0.523775	9.834526e-9	1.704028e-4	9.466824e-6
19	8038305	7899821	NM_020888	KIAA1522	0.519424	1.366492e-8	2.367720e-4	1.246169e-5
20	8038305	8073623	NM_001044370	MPPED1	0.517142	1.620755e-8	2.808282e-4	1.404141e-5
21	8038305	7901746			0.516561	1.692479e-8	2.932558e-4	1.396456e-5
22	8038305	8033956	NM_004230	S1PR2	0.514557	1.963583e-8	3.402300e-4	1.546500e-5
23	8038305	7998629	ENST00000431136		0.514331	1.996554e-8	3.459428e-4	1.504099e-5
24	8038305	8002590	ENST00000384740		0.512132	2.347234e-8	4.067052e-4	1.694605e-5
25	8038305	7936144	NM_000494	COL17A1	0.511125	2.526935e-8	4.378420e-4	1.751368e-5
26	8038305	8029701	NM_001080401	PPM1N	0.509949	2.753323e-8	4.770682e-4	1.834878e-5
27	8038305	7984961	NM_018652	GOLGA6B	0.509878	2.767534e-8	4.795307e-4	1.776040e-5
28	8038305	7994675	NM_181718	ASPHD1	0.509168	2.914122e-8	5.049299e-4	1.803321e-5
29	8038305	8157383	NM_032888	COL27A1	0.508652	3.025453e-8	5.242202e-4	1.807656e-5
30	8038305	7937728	NM_001145829	TNNI2	0.507753	3.228846e-8	5.594622e-4	1.864874e-5
31	8038305	7946167	NM_000613	HPX	0.507515	3.284888e-8	5.691726e-4	1.836041e-5
32	8038305	8035939	ENST00000410539		0.507487	3.291616e-8	5.703382e-4	1.782307e-5
33	8038305	8069987	NM_144659	TCP10L	0.507093	3.386498e-8	5.867785e-4	1.778117e-5
34	8038305	8032023	NM_016585	THEG	0.506771	3.466175e-8	6.005841e-4	1.766424e-5
35	8038305	7976844	hsa-mir-134		0.505070	3.916768e-8	6.786583e-4	1.939024e-5
36	8038305	8075992	NM_006941	SOX10	0.504707	4.020232e-8	6.965856e-4	1.934960e-5
37	8038305	8074991	NM_001099781	GGT5	0.503841	4.276813e-8	7.410433e-4	2.002820e-5
38	8038305	8085120			0.502699	4.639662e-8	8.039143e-4	2.115564e-5
39	8038305	8062377	NM_005417	SRC	0.501027	5.223832e-8	9.051333e-4	2.320855e-5
40	8038305	7958942	NM_001144872	CCDC42B	0.499678	5.745890e-8	9.955904e-4	2.488976e-5
41	8038305	8019010	NM_020649	CBX8	0.499641	5.760924e-8	9.981952e-4	2.434623e-5
42	8038305	7934719	NM_003019	SFTPD	0.499392	5.863142e-8	1.015907e-3	2.418825e-5
43	8038305	8117339	NM_003531	HIST1H3C	0.497419	6.733621e-8	1.166734e-3	2.713336e-5
44	8038305	8012212	NM_020899	ZBTB4	-0.496887	6.988892e-8	1.210965e-3	2.752194e-5
45	8038305	7984662	NM_018652	GOLGA6B	0.494081	8.494276e-8	1.471803e-3	3.270674e-5
46	8038305	8079966	NM_004636	SEMA3B	0.493940	8.577325e-8	1.486193e-3	3.230855e-5
47	8038305	8016400	hsa-mir-152		0.493254	8.993879e-8	1.558369e-3	3.315680e-5
48	8038305	7909965	NM_152610	C1orf65	0.492955	9.181033e-8	1.590798e-3	3.314162e-5
49	8038305	8021363			0.492800	9.279592e-8	1.607875e-3	3.281377e-5
50	8038305	8025328	NM_001159944	EVI5L	0.491963	9.830562e-8	1.703341e-3	3.406683e-5

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
Restrict output to	miRs, Transcription factors? (Empty: No restrictions.)
	with keyword:
	KEGG Pathway:
Limit output to	rows.
Remove	"self correlations", i.e. correlations of a variable with itself
Sort results by	positive, negative or absolute value of correlation