[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
5996	8062377	NM_005417	SRC		v-src sarcoma (Schmidt-Ruppin A-2) viral oncogene homolog (avian)

Fetching correlation data, please wait...
Getting list of correlations for id 5996.
Getting list of p-values for id 5996.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.124 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8062377	7916185	NM_001009881	ZCCHC11	-0.697918	1.298900e-16	2.250604e-12	2.250604e-12
2	8062377	8051622	NM_001031684	SRSF7	-0.669906	5.520357e-15	9.565123e-11	4.782561e-11
3	8062377	7951497	NM_002519	NPAT	-0.669511	5.803485e-15	1.005570e-10	3.351900e-11
4	8062377	8029671	NM_177417	KLC3	0.668139	6.899885e-15	1.195543e-10	2.988858e-11
5	8062377	8143441	BC012493	KIAA1147	-0.667168	7.793891e-15	1.350447e-10	2.700895e-11
6	8062377	8151074	NM_002603	PDE7A	-0.663404	1.244731e-14	2.156746e-10	3.594577e-11
7	8062377	8046975	NM_032168	WDR75	-0.663325	1.256902e-14	2.177833e-10	3.111191e-11
8	8062377	8054135	NM_012214	MGAT4A	-0.661571	1.559626e-14	2.702365e-10	3.377956e-11
9	8062377	7903239	NM_000028	AGL	-0.659600	1.984379e-14	3.438334e-10	3.820371e-11
10	8062377	8003810	ENST00000322899		0.657353	2.605592e-14	4.514709e-10	4.514709e-11
11	8062377	7947991	NM_015231	NUP160	-0.656877	2.759364e-14	4.781149e-10	4.346499e-11
12	8062377	8105353	NM_015360	SKIV2L2	-0.655653	3.196690e-14	5.538904e-10	4.615753e-11
13	8062377	7923442	NM_177402	SYT2	0.655558	3.233163e-14	5.602102e-10	4.309309e-11
14	8062377	8102171	NM_033115	TBCK	-0.652499	4.655599e-14	8.066757e-10	5.761969e-11
15	8062377	7962516	NM_030674	SLC38A1	-0.652423	4.697913e-14	8.140074e-10	5.426716e-11
16	8062377	8132118	NM_198098	AQP1	0.651258	5.391302e-14	9.341509e-10	5.838443e-11
17	8062377	8113157	NM_014639	TTC37	-0.650434	5.941121e-14	1.029418e-9	6.055401e-11
18	8062377	7916562	NM_002136	HNRNPA1	-0.650313	6.025889e-14	1.044106e-9	5.800588e-11
19	8062377	8171786	NM_153270	KLHL34	0.650292	6.041058e-14	1.046734e-9	5.509127e-11
20	8062377	7972723	NM_018011	ARGLU1	-0.648676	7.299984e-14	1.264868e-9	6.324341e-11
21	8062377	8131539	NM_018374	TMEM106B	-0.648506	7.446533e-14	1.290261e-9	6.144099e-11
22	8062377	8093792	NM_001528	HGFAC	0.647885	8.006289e-14	1.387250e-9	6.305681e-11
23	8062377	8078360	NM_178862	STT3B	-0.646529	9.372007e-14	1.623888e-9	7.060381e-11
24	8062377	8083094	NM_006506	RASA2	-0.646085	9.866272e-14	1.709529e-9	7.123037e-11
25	8062377	8044263	NM_006267	RANBP2	-0.644888	1.132850e-13	1.962890e-9	7.851560e-11
26	8062377	7943620	NM_000051	ATM	-0.643104	1.390380e-13	2.409111e-9	9.265810e-11
27	8062377	8079079	NM_005385	NKTR	-0.642690	1.457767e-13	2.525872e-9	9.355082e-11
28	8062377	7916969	NM_005455	ZRANB2	-0.642263	1.530602e-13	2.652074e-9	9.471692e-11
29	8062377	8000167	NM_015092	SMG1	-0.640872	1.793168e-13	3.107022e-9	1.071387e-10
30	8062377	7961767	AK295862	KIAA0528	-0.640168	1.942189e-13	3.365230e-9	1.121743e-10
31	8062377	8168316	NM_181672	OGT	-0.640147	1.946716e-13	3.373074e-9	1.088089e-10
32	8062377	8048205	NM_000597	IGFBP2	0.639659	2.057215e-13	3.564537e-9	1.113918e-10
33	8062377	8176109	NM_019848	SLC10A3	0.639038	2.206595e-13	3.823367e-9	1.158596e-10
34	8062377	8079021	NM_001904	CTNNB1	-0.638604	2.317222e-13	4.015051e-9	1.180897e-10
35	8062377	8081564	NM_198196	CD96	-0.637970	2.488530e-13	4.311875e-9	1.231964e-10
36	8062377	8000217	NM_015092	SMG1	-0.637772	2.544355e-13	4.408604e-9	1.224612e-10
37	8062377	8008493	NM_016424	LUC7L3	-0.637490	2.626268e-13	4.550535e-9	1.229874e-10
38	8062377	8105778	NM_181523	PIK3R1	-0.637324	2.675587e-13	4.635990e-9	1.219997e-10
39	8062377	8138670	NM_031243	HNRNPA2B1	-0.637063	2.754931e-13	4.773470e-9	1.223967e-10
40	8062377	8084128	NM_133462	TTC14	-0.636389	2.970482e-13	5.146954e-9	1.286738e-10
41	8062377	7993999	NM_015092	SMG1	-0.635818	3.165904e-13	5.485562e-9	1.337942e-10
42	8062377	8000222	NM_015092	SMG1	-0.635818	3.165904e-13	5.485562e-9	1.306086e-10
43	8062377	8156167	NM_024635	NAA35	-0.635763	3.185406e-13	5.519354e-9	1.283571e-10
44	8062377	8098512	NM_021942	C4orf41	-0.635721	3.200408e-13	5.545346e-9	1.260306e-10
45	8062377	8024467	NM_182973	TMPRSS9	0.633625	4.038118e-13	6.996848e-9	1.554855e-10
46	8062377	7994006	NM_015092	SMG1	-0.633244	4.212050e-13	7.298220e-9	1.586570e-10
47	8062377	8029489	NM_005581	BCAM	0.633202	4.231493e-13	7.331908e-9	1.559980e-10
48	8062377	8047518	NM_015934	NOP58	-0.632416	4.614312e-13	7.995218e-9	1.665670e-10
49	8062377	8085815	NM_001068	TOP2B	-0.632014	4.823090e-13	8.356968e-9	1.705504e-10
50	8062377	7918255	NM_001048210	CLCC1	-0.630735	5.549072e-13	9.614877e-9	1.922975e-10

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
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	with keyword:
	KEGG Pathway:
Limit output to	rows.
Remove	"self correlations", i.e. correlations of a variable with itself
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