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Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Search Options: Find correlations between...
Gene/Label/Number: and (Empty also means "all others")
Output Options
Restrict output to miRs, Transcription factors? (Empty: No restrictions.)
  with keyword:
 KEGG Pathway:
Limit output to rows.
Remove "self correlations", i.e. correlations of a variable with itself
Sort results by positive, negative or absolute value of correlation
Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id Label1 AccNum GeneSym Info Gene Name
6368 8078665 NM_015873 VILL link to infopage villin-like

Fetching correlation data, please wait...
Getting list of correlations for id 6368.
Getting list of p-values for id 6368.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.135 seconds. Transmitting 50 results:

Column legend:

Rank Label1 Label2 AccNum GeneSym Info Pearson r Raw p Bonferroni FDR (BH)
1 8078665 8088535 NM_014814 PSMD6 link to infopage -0.611048 4.440655e-12 7.694323e-8 7.694323e-8
2 8078665 8068551 NM_101395 DYRK1A link to infopage -0.589731 3.610704e-11 6.256266e-7 3.128133e-7
3 8078665 8081055 NM_014043 CHMP2B link to infopage -0.588884 3.911895e-11 6.778140e-7 2.259380e-7
4 8078665 7915775 NM_005897 IPP link to infopage -0.585413 5.419331e-11 9.390074e-7 2.347519e-7
5 8078665 8088339 NM_001660 ARF4 link to infopage -0.584699 5.792502e-11 1.003667e-6 2.007334e-7
6 8078665 7963265 NR_026893 POU6F1 link to infopage 0.582572 7.056337e-11 1.222651e-6 2.037752e-7
7 8078665 7960283 NM_172364 CACNA2D4 link to infopage 0.581333 7.910563e-11 1.370663e-6 1.958090e-7
8 8078665 8024100 NM_138690 GRIN3B link to infopage 0.581064 8.109308e-11 1.405100e-6 1.756375e-7
9 8078665 7957277 NM_015336 ZDHHC17 link to infopage -0.580913 8.222843e-11 1.424772e-6 1.583080e-7
10 8078665 8023672 NM_004869 VPS4B link to infopage -0.580382 8.633666e-11 1.495955e-6 1.495955e-7
11 8078665 7970793 NM_181785 SLC46A3 link to infopage -0.578106 1.063100e-10 1.842033e-6 1.674576e-7
12 8078665 7922870 NM_030934 C1orf25 link to infopage -0.577334 1.140402e-10 1.975975e-6 1.646646e-7
13 8078665 8082911 NM_006153 NCK1 link to infopage -0.577312 1.142628e-10 1.979832e-6 1.522948e-7
14 8078665 8152477 NM_006265 RAD21 link to infopage -0.577164 1.158129e-10 2.006690e-6 1.433350e-7
15 8078665 8028325 NM_033520 C19orf33 link to infopage 0.576907 1.185405e-10 2.053951e-6 1.369301e-7
16 8078665 8021774 ENST00000405150 link to infopage 0.573585 1.599655e-10 2.771722e-6 1.732326e-7
17 8078665 7909931 NM_144695 C1orf58 link to infopage -0.573217 1.653250e-10 2.864586e-6 1.685050e-7
18 8078665 8174853 NM_001080141 CT47A6 link to infopage 0.573124 1.667066e-10 2.888525e-6 1.604736e-7
19 8078665 7962537 NM_018976 SLC38A2 link to infopage -0.570240 2.155762e-10 3.735288e-6 1.965941e-7
20 8078665 8036079 NM_033317 DMKN link to infopage 0.568600 2.492252e-10 4.318325e-6 2.159163e-7
21 8078665 7917599 NM_020063 BARHL2 link to infopage 0.568026 2.621640e-10 4.542516e-6 2.163103e-7
22 8078665 8105463 NM_022913 GPBP1 link to infopage -0.567897 2.651489e-10 4.594235e-6 2.088288e-7
23 8078665 8153101 NM_152888 COL22A1 link to infopage 0.567102 2.843486e-10 4.926908e-6 2.142134e-7
24 8078665 8028186 NM_007145 ZNF146 link to infopage -0.566222 3.071295e-10 5.321633e-6 2.217347e-7
25 8078665 8174837 NM_001080146 CT47A1 link to infopage 0.565597 3.243973e-10 5.620832e-6 2.248333e-7
26 8078665 8174841 NM_001080146 CT47A1 link to infopage 0.565597 3.243973e-10 5.620832e-6 2.161859e-7
27 8078665 8174845 NM_001080146 CT47A1 link to infopage 0.565597 3.243973e-10 5.620832e-6 2.081790e-7
28 8078665 8174876 NM_001080146 CT47A1 link to infopage 0.565597 3.243973e-10 5.620832e-6 2.007440e-7
29 8078665 8174862 NM_001080137 CT47A10 link to infopage 0.565597 3.243973e-10 5.620832e-6 1.938218e-7
30 8078665 8174849 NM_001080146 CT47A1 link to infopage 0.565597 3.243973e-10 5.620832e-6 1.873611e-7
31 8078665 8174872 NM_001080146 CT47A1 link to infopage 0.565597 3.243973e-10 5.620832e-6 1.813172e-7
32 8078665 8174882 NM_001080146 CT47A1 link to infopage 0.565597 3.243973e-10 5.620832e-6 1.756510e-7
33 8078665 8174867 NM_001080146 CT47A1 link to infopage 0.565597 3.243973e-10 5.620832e-6 1.703282e-7
34 8078665 8029624 ENST00000421905 link to infopage 0.565224 3.351237e-10 5.806689e-6 1.707850e-7
35 8078665 8028872 NM_001042544 LTBP4 link to infopage 0.565081 3.393306e-10 5.879581e-6 1.679880e-7
36 8078665 7970727 NM_001265 CDX2 link to infopage 0.564644 3.524922e-10 6.107632e-6 1.696564e-7
37 8078665 8052204 NM_020532 RTN4 link to infopage -0.564525 3.561675e-10 6.171315e-6 1.667923e-7
38 8078665 7910550 NM_005999 TSNAX link to infopage -0.564487 3.573547e-10 6.191884e-6 1.629443e-7
39 8078665 8081667 NM_017945 SLC35A5 link to infopage -0.564271 3.641149e-10 6.309018e-6 1.617697e-7
40 8078665 8147228 NM_001359 DECR1 link to infopage -0.563965 3.739379e-10 6.479221e-6 1.619805e-7
41 8078665 7914974 NM_000831 GRIK3 link to infopage 0.562675 4.181807e-10 7.245817e-6 1.767272e-7
42 8078665 8062880 NM_003404 YWHAB link to infopage -0.562409 4.279082e-10 7.414366e-6 1.765325e-7
43 8078665 7970831 NM_007106 UBL3 link to infopage -0.561914 4.465837e-10 7.737955e-6 1.799525e-7
44 8078665 7998668 NM_144603 NOXO1 link to infopage 0.560940 4.856515e-10 8.414884e-6 1.912474e-7
45 8078665 7994985 NM_014712 SETD1A link to infopage 0.560371 5.100063e-10 8.836879e-6 1.963751e-7
46 8078665 7945475 NM_021924 CDHR5 link to infopage 0.560212 5.170108e-10 8.958246e-6 1.947445e-7
47 8078665 8062873 NM_022358 KCNK15 link to infopage 0.559771 5.369025e-10 9.302909e-6 1.979342e-7
48 8078665 8109403 NR_024152 MFAP3 link to infopage -0.558649 5.909491e-10 1.023937e-5 2.133203e-7
49 8078665 8016487 NM_006361 HOXB13 link to infopage 0.558192 6.144199e-10 1.064605e-5 2.172664e-7
50 8078665 8091048 NR_023350 COPB2 link to infopage -0.558108 6.188683e-10 1.072313e-5 2.144626e-7

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

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