[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 8 variables:
id	Label1	AccNum	GeneSym	Info	Gene Name
4108	8174837	NM_001080146	CT47A1		cancer/testis antigen family 47, member A1
4109	8174841	NM_001080146	CT47A1		cancer/testis antigen family 47, member A1
4110	8174845	NM_001080146	CT47A1		cancer/testis antigen family 47, member A1
4111	8174849	NM_001080146	CT47A1		cancer/testis antigen family 47, member A1
4113	8174867	NM_001080146	CT47A1		cancer/testis antigen family 47, member A1
4114	8174872	NM_001080146	CT47A1		cancer/testis antigen family 47, member A1
4115	8174876	NM_001080146	CT47A1		cancer/testis antigen family 47, member A1
4116	8174882	NM_001080146	CT47A1		cancer/testis antigen family 47, member A1

Fetching correlation data, please wait...
Getting list of correlations for id 4108.
Getting list of p-values for id 4108.
1 of 8 done.
Getting list of correlations for id 4109.
Getting list of p-values for id 4109.
2 of 8 done.
Getting list of correlations for id 4110.
Getting list of p-values for id 4110.
3 of 8 done.
Getting list of correlations for id 4111.
Getting list of p-values for id 4111.
4 of 8 done.
Getting list of correlations for id 4113.
Getting list of p-values for id 4113.
5 of 8 done.
Getting list of correlations for id 4114.
Getting list of p-values for id 4114.
6 of 8 done.
Getting list of correlations for id 4115.
Getting list of p-values for id 4115.
7 of 8 done.
Getting list of correlations for id 4116.
Getting list of p-values for id 4116.
8 of 8 done.
Calculating corrections for multiple testing (n=138616), please wait...
Done; whole program took 0.808 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8174882	8174849	NM_001080146	CT47A1	1.000000	0.000000e+0	0.000000e+0	0.000000e+0
2	8174837	8174841	NM_001080146	CT47A1	1.000000	0.000000e+0	0.000000e+0	0.000000e+0
3	8174837	8174872	NM_001080146	CT47A1	1.000000	0.000000e+0	0.000000e+0	0.000000e+0
4	8174872	8174845	NM_001080146	CT47A1	1.000000	0.000000e+0	0.000000e+0	0.000000e+0
5	8174837	8174867	NM_001080146	CT47A1	1.000000	0.000000e+0	0.000000e+0	0.000000e+0
6	8174837	8174862	NM_001080137	CT47A10	1.000000	0.000000e+0	0.000000e+0	0.000000e+0
7	8174837	8174849	NM_001080146	CT47A1	1.000000	0.000000e+0	0.000000e+0	0.000000e+0
8	8174837	8174845	NM_001080146	CT47A1	1.000000	0.000000e+0	0.000000e+0	0.000000e+0
9	8174872	8174849	NM_001080146	CT47A1	1.000000	0.000000e+0	0.000000e+0	0.000000e+0
10	8174849	8174882	NM_001080146	CT47A1	1.000000	0.000000e+0	0.000000e+0	0.000000e+0
11	8174872	8174862	NM_001080137	CT47A10	1.000000	0.000000e+0	0.000000e+0	0.000000e+0
12	8174867	8174845	NM_001080146	CT47A1	1.000000	0.000000e+0	0.000000e+0	0.000000e+0
13	8174872	8174867	NM_001080146	CT47A1	1.000000	0.000000e+0	0.000000e+0	0.000000e+0
14	8174845	8174876	NM_001080146	CT47A1	1.000000	0.000000e+0	0.000000e+0	0.000000e+0
15	8174845	8174872	NM_001080146	CT47A1	1.000000	0.000000e+0	0.000000e+0	0.000000e+0
16	8174845	8174867	NM_001080146	CT47A1	1.000000	0.000000e+0	0.000000e+0	0.000000e+0
17	8174837	8174876	NM_001080146	CT47A1	1.000000	0.000000e+0	0.000000e+0	0.000000e+0
18	8174872	8174841	NM_001080146	CT47A1	1.000000	0.000000e+0	0.000000e+0	0.000000e+0
19	8174845	8174849	NM_001080146	CT47A1	1.000000	0.000000e+0	0.000000e+0	0.000000e+0
20	8174882	8174862	NM_001080137	CT47A10	1.000000	0.000000e+0	0.000000e+0	0.000000e+0
21	8174867	8174849	NM_001080146	CT47A1	1.000000	0.000000e+0	0.000000e+0	0.000000e+0
22	8174867	8174862	NM_001080137	CT47A10	1.000000	0.000000e+0	0.000000e+0	0.000000e+0
23	8174867	8174872	NM_001080146	CT47A1	1.000000	0.000000e+0	0.000000e+0	0.000000e+0
24	8174867	8174876	NM_001080146	CT47A1	1.000000	0.000000e+0	0.000000e+0	0.000000e+0
25	8174867	8174882	NM_001080146	CT47A1	1.000000	0.000000e+0	0.000000e+0	0.000000e+0
26	8174867	8174837	NM_001080146	CT47A1	1.000000	0.000000e+0	0.000000e+0	0.000000e+0
27	8174849	8174837	NM_001080146	CT47A1	1.000000	0.000000e+0	0.000000e+0	0.000000e+0
28	8174837	8174882	NM_001080146	CT47A1	1.000000	0.000000e+0	0.000000e+0	0.000000e+0
29	8174849	8174841	NM_001080146	CT47A1	1.000000	0.000000e+0	0.000000e+0	0.000000e+0
30	8174849	8174845	NM_001080146	CT47A1	1.000000	0.000000e+0	0.000000e+0	0.000000e+0
31	8174849	8174862	NM_001080137	CT47A10	1.000000	0.000000e+0	0.000000e+0	0.000000e+0
32	8174849	8174867	NM_001080146	CT47A1	1.000000	0.000000e+0	0.000000e+0	0.000000e+0
33	8174849	8174872	NM_001080146	CT47A1	1.000000	0.000000e+0	0.000000e+0	0.000000e+0
34	8174849	8174876	NM_001080146	CT47A1	1.000000	0.000000e+0	0.000000e+0	0.000000e+0
35	8174872	8174837	NM_001080146	CT47A1	1.000000	0.000000e+0	0.000000e+0	0.000000e+0
36	8174845	8174862	NM_001080137	CT47A10	1.000000	0.000000e+0	0.000000e+0	0.000000e+0
37	8174845	8174882	NM_001080146	CT47A1	1.000000	0.000000e+0	0.000000e+0	0.000000e+0
38	8174867	8174841	NM_001080146	CT47A1	1.000000	0.000000e+0	0.000000e+0	0.000000e+0
39	8174845	8174837	NM_001080146	CT47A1	1.000000	0.000000e+0	0.000000e+0	0.000000e+0
40	8174882	8174837	NM_001080146	CT47A1	1.000000	0.000000e+0	0.000000e+0	0.000000e+0
41	8174882	8174876	NM_001080146	CT47A1	1.000000	0.000000e+0	0.000000e+0	0.000000e+0
42	8174872	8174882	NM_001080146	CT47A1	1.000000	0.000000e+0	0.000000e+0	0.000000e+0
43	8174882	8174841	NM_001080146	CT47A1	1.000000	0.000000e+0	0.000000e+0	0.000000e+0
44	8174882	8174845	NM_001080146	CT47A1	1.000000	0.000000e+0	0.000000e+0	0.000000e+0
45	8174841	8174882	NM_001080146	CT47A1	1.000000	0.000000e+0	0.000000e+0	0.000000e+0
46	8174845	8174841	NM_001080146	CT47A1	1.000000	0.000000e+0	0.000000e+0	0.000000e+0
47	8174841	8174876	NM_001080146	CT47A1	1.000000	0.000000e+0	0.000000e+0	0.000000e+0
48	8174882	8174867	NM_001080146	CT47A1	1.000000	0.000000e+0	0.000000e+0	0.000000e+0
49	8174841	8174867	NM_001080146	CT47A1	1.000000	0.000000e+0	0.000000e+0	0.000000e+0
50	8174841	8174862	NM_001080137	CT47A10	1.000000	0.000000e+0	0.000000e+0	0.000000e+0

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
Restrict output to	miRs, Transcription factors? (Empty: No restrictions.)
	with keyword:
	KEGG Pathway:
Limit output to	rows.
Remove	"self correlations", i.e. correlations of a variable with itself
Sort results by	positive, negative or absolute value of correlation