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Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Search Options: Find correlations between...
Gene/Label/Number: and (Empty also means "all others")
Output Options
Restrict output to miRs, Transcription factors? (Empty: No restrictions.)
  with keyword:
 KEGG Pathway:
Limit output to rows.
Remove "self correlations", i.e. correlations of a variable with itself
Sort results by positive, negative or absolute value of correlation
Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id Label1 AccNum GeneSym Info Gene Name
4112 8174862 NM_001080137 CT47A10 link to infopage cancer/testis antigen family 47, member A10

Fetching correlation data, please wait...
Getting list of correlations for id 4112.
Getting list of p-values for id 4112.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.138 seconds. Transmitting 50 results:

Column legend:

Rank Label1 Label2 AccNum GeneSym Info Pearson r Raw p Bonferroni FDR (BH)
1 8174862 8174837 NM_001080146 CT47A1 link to infopage 1.000000 0.000000e+0 0.000000e+0 0.000000e+0
2 8174862 8174867 NM_001080146 CT47A1 link to infopage 1.000000 0.000000e+0 0.000000e+0 0.000000e+0
3 8174862 8174841 NM_001080146 CT47A1 link to infopage 1.000000 0.000000e+0 0.000000e+0 0.000000e+0
4 8174862 8174845 NM_001080146 CT47A1 link to infopage 1.000000 0.000000e+0 0.000000e+0 0.000000e+0
5 8174862 8174849 NM_001080146 CT47A1 link to infopage 1.000000 0.000000e+0 0.000000e+0 0.000000e+0
6 8174862 8174882 NM_001080146 CT47A1 link to infopage 1.000000 0.000000e+0 0.000000e+0 0.000000e+0
7 8174862 8174876 NM_001080146 CT47A1 link to infopage 1.000000 0.000000e+0 0.000000e+0 0.000000e+0
8 8174862 8174872 NM_001080146 CT47A1 link to infopage 1.000000 0.000000e+0 0.000000e+0 0.000000e+0
9 8174862 8174853 NM_001080141 CT47A6 link to infopage 0.981800 3.930728e-76 6.810773e-72 7.567526e-73
10 8174862 8008201 NM_002507 NGFR link to infopage 0.778067 1.597886e-22 2.768657e-18 2.768657e-19
11 8174862 8074131 NM_001080420 SHANK3 link to infopage 0.777583 1.763949e-22 3.056395e-18 2.778541e-19
12 8174862 7937433 NM_000797 DRD4 link to infopage 0.773725 3.841912e-22 6.656881e-18 5.547401e-19
13 8174862 8004763 NM_000180 GUCY2D link to infopage 0.772251 5.152231e-22 8.927271e-18 6.867131e-19
14 8174862 7947928 NM_031909 C1QTNF4 link to infopage 0.764786 2.203202e-21 3.817488e-17 2.726777e-18
15 8174862 8174831 NM_001145718 CT47B1 link to infopage 0.764420 2.362381e-21 4.093297e-17 2.728865e-18
16 8174862 8063796 NM_001794 CDH4 link to infopage 0.763485 2.822550e-21 4.890633e-17 3.056645e-18
17 8174862 8053046 NM_003584 DUSP11 link to infopage -0.759521 5.945603e-21 1.030195e-16 6.059969e-18
18 8174862 8105463 NM_022913 GPBP1 link to infopage -0.754772 1.424859e-20 2.468853e-16 1.371585e-17
19 8174862 8166500 NM_003410 ZFX link to infopage -0.753766 1.710325e-20 2.963480e-16 1.559727e-17
20 8174862 7938090 NM_176875 CCKBR link to infopage 0.751778 2.447519e-20 4.240816e-16 2.120408e-17
21 8174862 7989323 NM_004330 BNIP2 link to infopage -0.751646 2.506166e-20 4.342434e-16 2.067826e-17
22 8174862 8032265 NM_203304 MEX3D link to infopage 0.750776 2.928175e-20 5.073649e-16 2.306204e-17
23 8174862 8161265 NM_001007563 IGFBPL1 link to infopage 0.750454 3.100775e-20 5.372713e-16 2.335962e-17
24 8174862 8060604 NM_000915 OXT link to infopage 0.749139 3.917100e-20 6.787160e-16 2.827983e-17
25 8174862 7898556 NM_001040125 PQLC2 link to infopage 0.749081 3.957616e-20 6.857361e-16 2.742945e-17
26 8174862 7991459 NM_020211 RGMA link to infopage 0.748108 4.699991e-20 8.143674e-16 3.132182e-17
27 8174862 7928291 NM_004273 CHST3 link to infopage 0.746928 5.783172e-20 1.002050e-15 3.711297e-17
28 8174862 7903541 NM_007269 STXBP3 link to infopage -0.746833 5.880778e-20 1.018962e-15 3.639151e-17
29 8174862 7975113 NM_145165 CHURC1 link to infopage -0.746762 5.954093e-20 1.031666e-15 3.557468e-17
30 8174862 8024100 NM_138690 GRIN3B link to infopage 0.746637 6.086018e-20 1.054524e-15 3.515081e-17
31 8174862 8037651 NM_175875 SIX5 link to infopage 0.746331 6.421100e-20 1.112584e-15 3.588981e-17
32 8174862 7910520 NM_014236 GNPAT link to infopage -0.744244 9.231801e-20 1.599594e-15 4.998732e-17
33 8174862 7934544 NM_144589 COMTD1 link to infopage 0.744233 9.248597e-20 1.602504e-15 4.856074e-17
34 8174862 8070341 NM_033656 BRWD1 link to infopage -0.744074 9.507591e-20 1.647380e-15 4.845236e-17
35 8174862 8033462 NM_206833 CTXN1 link to infopage 0.742603 1.225281e-19 2.123045e-15 6.065842e-17
36 8174862 8106784 NM_002890 RASA1 link to infopage -0.741443 1.494710e-19 2.589884e-15 7.194123e-17
37 8174862 7946354 NM_002315 LMO1 link to infopage 0.740529 1.746858e-19 3.026781e-15 8.180490e-17
38 8174862 8127128 NM_033480 FBXO9 link to infopage 0.740290 1.819225e-19 3.152172e-15 8.295189e-17
39 8174862 7981326 AF305836 DIO3OS link to infopage 0.739950 1.927522e-19 3.339817e-15 8.563634e-17
40 8174862 8082688 NM_015268 DNAJC13 link to infopage -0.739269 2.163162e-19 3.748110e-15 9.370275e-17
41 8174862 7997264 NM_001906 CTRB1 link to infopage 0.739107 2.223274e-19 3.852268e-15 9.395774e-17
42 8174862 8093425 NM_000203 IDUA link to infopage 0.739008 2.260929e-19 3.917512e-15 9.327409e-17
43 8174862 8138757 NM_018951 HOXA10 link to infopage 0.738742 2.364743e-19 4.097390e-15 9.528815e-17
44 8174862 8028872 NM_001042544 LTBP4 link to infopage 0.738528 2.451569e-19 4.247833e-15 9.654167e-17
45 8174862 7971820 NM_016075 VPS36 link to infopage -0.738459 2.480392e-19 4.297774e-15 9.550610e-17
46 8174862 7896822 NM_198576 AGRN link to infopage 0.738404 2.503477e-19 4.337775e-15 9.429945e-17
47 8174862 8062873 NM_022358 KCNK15 link to infopage 0.738331 2.534401e-19 4.391356e-15 9.343311e-17
48 8174862 7952897 NM_015232 IQSEC3 link to infopage 0.738307 2.544965e-19 4.409661e-15 9.186793e-17
49 8174862 7915078 NM_173641 EPHA10 link to infopage 0.737645 2.844414e-19 4.928517e-15 1.005820e-16
50 8174862 8138770 NM_000522 HOXA13 link to infopage 0.737642 2.845927e-19 4.931138e-15 9.862275e-17

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

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