[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
4105	8041447	NM_016441	CRIM1		cysteine rich transmembrane BMP regulator 1 (chordin-like)

Fetching correlation data, please wait...
Getting list of correlations for id 4105.
Getting list of p-values for id 4105.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.094 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8041447	8114900	NM_004576	PPP2R2B	0.504711	4.018891e-8	6.963533e-4	6.963533e-4
2	8041447	7996064	NM_153837	GPR114	0.497738	6.585130e-8	1.141005e-3	5.705027e-4
3	8041447	8131140	AK024457	LOC100288594	0.493680	8.733195e-8	1.513201e-3	5.044002e-4
4	8041447	7939383	NM_024841	PRR5L	0.487080	1.371575e-7	2.376529e-3	5.941321e-4
5	8041447	8109086	NM_000024	ADRB2	0.471766	3.771956e-7	6.535668e-3	1.307134e-3
6	8041447	8038809	NM_005601	NKG7	0.463118	6.537192e-7	1.132699e-2	1.887832e-3
7	8041447	8031346	NM_002255	KIR2DL4	0.452265	1.276347e-6	2.211526e-2	3.159323e-3
8	8041447	8039859	NM_002255	KIR2DL4	0.451775	1.314798e-6	2.278151e-2	2.847689e-3
9	8041447	8073842	NM_017931	TTC38	0.443990	2.093679e-6	3.627717e-2	4.030797e-3
10	8041447	8093456	NM_052861	C4orf42	0.428302	5.166912e-6	8.952708e-2	8.952708e-3
11	8041447	8021047	NM_015559	SETBP1	0.427391	5.437668e-6	9.421848e-2	8.565316e-3
12	8041447	7906475	NM_001004310	FCRL6	0.425221	6.137519e-6	1.063448e-1	8.862065e-3
13	8041447	7996081	NM_201524	GPR56	0.425040	6.199713e-6	1.074224e-1	8.263264e-3
14	8041447	8074780	NM_013313	YPEL1	0.420942	7.773783e-6	1.346963e-1	9.621168e-3
15	8041447	7974363	NM_000953	PTGDR	0.420625	7.910119e-6	1.370586e-1	9.137243e-3
16	8041447	7913805	NM_001031680	RUNX3	0.419774	8.287456e-6	1.435968e-1	8.974797e-3
17	8041447	7908968	NM_017773	LAX1	0.418969	8.659436e-6	1.500421e-1	8.826003e-3
18	8041447	8086842	NM_002375	MAP4	0.417611	9.323752e-6	1.615526e-1	8.975147e-3
19	8041447	8010918	NM_001128159	VPS53	0.416587	9.855804e-6	1.707715e-1	8.987975e-3
20	8041447	8028309	ENST00000459181		0.416344	9.986080e-6	1.730288e-1	8.651441e-3
21	8041447	8031293	NM_014511	KIR2DL3	0.414847	1.082551e-5	1.875736e-1	8.932077e-3
22	8041447	8031311	NM_013289	KIR3DL1	0.413525	1.162150e-5	2.013657e-1	9.152987e-3
23	8041447	8039820	NM_153443	KIR3DL3	0.412220	1.246158e-5	2.159217e-1	9.387901e-3
24	8041447	7951157	AK313893	CCDC82	0.412189	1.248200e-5	2.162756e-1	9.011482e-3
25	8041447	7966089	NM_001142343	CMKLR1	0.410150	1.391175e-5	2.410490e-1	9.641959e-3
26	8041447	7919394	NR_024510	LOC728855	0.409465	1.442546e-5	2.499499e-1	9.613459e-3
27	8041447	hsa-miR-148b	MI0000811		-0.407175	1.627511e-5	2.819989e-1	1.044440e-2
28	8041447	8075106	NM_003595	TPST2	0.404995	1.824194e-5	3.160780e-1	1.128850e-2
29	8041447	8003824	NM_004937	CTNS	0.401623	2.172631e-5	3.764517e-1	1.298109e-2
30	8041447	7898353	NR_027002	LOC388692	0.397348	2.704581e-5	4.686227e-1	1.562076e-2
31	8041447	8150962	NM_014729	TOX	0.396178	2.870097e-5	4.973018e-1	1.604199e-2
32	8041447	8023344	NM_001101654	CXXC1	0.394303	3.155216e-5	5.467042e-1	1.708451e-2
33	8041447	8173208	NM_001012968	SPIN4	0.392969	3.374050e-5	5.846217e-1	1.771581e-2
34	8041447	7998083	NR_003228	AFG3L1	0.392607	3.435932e-5	5.953439e-1	1.751011e-2
35	8041447	8032682	NM_139355	MATK	0.390522	3.812764e-5	6.606377e-1	1.887536e-2
36	8041447	8008029	NM_013351	TBX21	0.390263	3.862296e-5	6.692201e-1	1.858945e-2
37	8041447	7952884	NM_054025	B3GAT1	0.390063	3.900792e-5	6.758902e-1	1.826730e-2
38	8041447	8152119	NM_001040624	NCALD	0.385328	4.926787e-5	8.536643e-1	2.246485e-2
39	8041447	7943760	NM_015191	SIK2	0.384015	5.252992e-5	9.101859e-1	2.333810e-2
40	8041447	8160953	NM_032634	PIGO	0.383223	5.459560e-5	9.459780e-1	2.364945e-2
41	8041447	8073096	NM_181773	APOBEC3H	0.382155	5.749859e-5	9.962780e-1	2.429946e-2
42	8041447	8139113	ENST00000447997		0.381267	6.002233e-5	1.040007e+0	2.476207e-2
43	8041447	7910146	NM_000447	PSEN2	0.379939	6.398827e-5	1.108725e+0	2.578430e-2
44	8041447	8176163	NM_001081573	GAB3	0.378305	6.920669e-5	1.199144e+0	2.725328e-2
45	8041447	8006906	NM_001005862	ERBB2	0.377147	7.313951e-5	1.267288e+0	2.816196e-2
46	8041447	7934161	NM_005041	PRF1	0.375642	7.856588e-5	1.361311e+0	2.959372e-2
47	8041447	7937438	NM_174940	TMEM80	0.375142	8.044744e-5	1.393913e+0	2.965772e-2
48	8041447	8059720	NM_006056	NMUR1	0.374682	8.221867e-5	1.424603e+0	2.967923e-2
49	8041447	7915392	NM_024503	HIVEP3	0.373884	8.537750e-5	1.479336e+0	3.019053e-2
50	8041447	8031358	NM_012314	KIR2DS4	0.373182	8.824425e-5	1.529008e+0	3.058016e-2

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
Restrict output to	miRs, Transcription factors? (Empty: No restrictions.)
	with keyword:
	KEGG Pathway:
Limit output to	rows.
Remove	"self correlations", i.e. correlations of a variable with itself
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