[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
6489	7908968	NM_017773	LAX1		lymphocyte transmembrane adaptor 1

Fetching correlation data, please wait...
Getting list of correlations for id 6489.
Getting list of p-values for id 6489.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.108 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	7908968	8150962	NM_014729	TOX	0.638558	2.329174e-13	4.035759e-9	4.035759e-9
2	7908968	8014891	NM_012481	IKZF3	0.637328	2.674439e-13	4.634001e-9	2.317001e-9
3	7908968	7906061	NM_152280	SYT11	0.635072	3.440009e-13	5.960503e-9	1.986834e-9
4	7908968	7951752	NM_020886	USP28	0.626868	8.446182e-13	1.463470e-8	3.658675e-9
5	7908968	7917649	NM_003243	TGFBR3	0.614894	2.991638e-12	5.183611e-8	1.036722e-8
6	7908968	7906386	NM_152501	PYHIN1	0.598895	1.494587e-11	2.589670e-7	4.316117e-8
7	7908968	7950810	NM_206927	SYTL2	0.596341	1.916360e-11	3.320478e-7	4.743539e-8
8	7908968	7903393	NM_001400	S1PR1	0.590410	3.385354e-11	5.865803e-7	7.332253e-8
9	7908968	8145586	NM_018091	ELP3	0.589597	3.656777e-11	6.336098e-7	7.040109e-8
10	7908968	8020806	NM_017831	RNF125	0.586165	5.051440e-11	8.752630e-7	8.752630e-8
11	7908968	7928395	NM_173540	FUT11	0.576872	1.189271e-10	2.060649e-6	1.873318e-7
12	7908968	8065165	NM_152227	SNX5	0.576499	1.230083e-10	2.131364e-6	1.776137e-7
13	7908968	7972867	NM_001127202	PCID2	0.573228	1.651679e-10	2.861865e-6	2.201434e-7
14	7908968	8156026	NM_001098802	CEP78	0.573105	1.669927e-10	2.893483e-6	2.066774e-7
15	7908968	8167125	NM_004651	USP11	0.571188	1.981612e-10	3.433538e-6	2.289026e-7
16	7908968	8038809	NM_005601	NKG7	0.570637	2.081096e-10	3.605914e-6	2.253697e-7
17	7908968	7995755	NM_018233	OGFOD1	0.570200	2.163393e-10	3.748512e-6	2.205007e-7
18	7908968	7965812	NM_024312	GNPTAB	0.568047	2.616736e-10	4.534019e-6	2.518900e-7
19	7908968	7914563	NM_003680	YARS	0.566343	3.039076e-10	5.265806e-6	2.771477e-7
20	7908968	8141380	NM_032924	ZNF3	0.565078	3.394178e-10	5.881092e-6	2.940546e-7
21	7908968	7963614	NM_000889	ITGB7	0.565036	3.406724e-10	5.902830e-6	2.810871e-7
22	7908968	7976200	NM_006888	CALM1	0.564186	3.668271e-10	6.356013e-6	2.889097e-7
23	7908968	8059854	NM_005737	ARL4C	0.563169	4.006605e-10	6.942245e-6	3.018367e-7
24	7908968	8021183	NR_003003	SCARNA17	0.561363	4.682864e-10	8.113998e-6	3.380833e-7
25	7908968	8028756	NM_006503	PSMC4	0.559912	5.304731e-10	9.191508e-6	3.676603e-7
26	7908968	8152119	NM_001040624	NCALD	0.559685	5.408559e-10	9.371410e-6	3.604389e-7
27	7908968	8054978	NM_000122	ERCC3	0.558612	5.928199e-10	1.027179e-5	3.804367e-7
28	7908968	8136614	NM_018238	AGK	0.558138	6.172925e-10	1.069583e-5	3.819938e-7
29	7908968	8127031	NM_002388	MCM3	0.557700	6.407241e-10	1.110183e-5	3.828216e-7
30	7908968	8105340	NM_006144	GZMA	0.556619	7.023233e-10	1.216916e-5	4.056385e-7
31	7908968	8027390	NM_006627	POP4	0.554185	8.625189e-10	1.494486e-5	4.820924e-7
32	7908968	7904287	NM_001767	CD2	0.553513	9.126617e-10	1.581369e-5	4.941778e-7
33	7908968	7921625	NM_052931	SLAMF6	0.551929	1.041987e-9	1.805451e-5	5.471063e-7
34	7908968	8070799	NM_182688	UBE2G2	0.550595	1.164442e-9	2.017629e-5	5.934204e-7
35	7908968	8051413	NM_015475	FAM98A	0.550060	1.217276e-9	2.109175e-5	6.026213e-7
36	7908968	7951112	NR_023356	MTMR2	0.548333	1.404270e-9	2.433179e-5	6.758832e-7
37	7908968	8115234	NM_001155	ANXA6	0.546987	1.568761e-9	2.718192e-5	7.346464e-7
38	7908968	7934161	NM_005041	PRF1	0.546649	1.612871e-9	2.794622e-5	7.354268e-7
39	7908968	8130505	NM_003379	EZR	0.545919	1.712182e-9	2.966698e-5	7.606917e-7
40	7908968	8158446	NM_015354	NUP188	0.545195	1.816612e-9	3.147644e-5	7.869110e-7
41	7908968	8140782	NM_000927	ABCB1	0.542857	2.197094e-9	3.806906e-5	9.285136e-7
42	7908968	8010949	NM_016080	GLOD4	0.542147	2.326945e-9	4.031898e-5	9.599756e-7
43	7908968	8021181	NR_003003	SCARNA17	0.541861	2.381413e-9	4.126274e-5	9.595985e-7
44	7908968	7985119	NM_018200	HMG20A	0.541720	2.408608e-9	4.173394e-5	9.484987e-7
45	7908968	8114396	NM_004661	CDC23	0.540107	2.742593e-9	4.752092e-5	1.056020e-6
46	7908968	8027241	NM_021047	ZNF253	0.539879	2.793210e-9	4.839795e-5	1.052129e-6
47	7908968	8145782	NM_032509	MAK16	0.538611	3.091593e-9	5.356803e-5	1.139745e-6
48	7908968	7922040	NM_198053	CD247	0.538438	3.134566e-9	5.431263e-5	1.131513e-6
49	7908968	8162313	NM_013417	IARS	0.537202	3.459244e-9	5.993831e-5	1.223231e-6
50	7908968	7939383	NM_024841	PRR5L	0.537049	3.501457e-9	6.066975e-5	1.213395e-6

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
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	with keyword:
	KEGG Pathway:
Limit output to	rows.
Remove	"self correlations", i.e. correlations of a variable with itself
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