[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
User requested variable id 4234.
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
4234	8031346	NM_002255	KIR2DL4		killer cell immunoglobulin-like receptor, two domains, long cytoplasmic tail, 4

Fetching correlation data, please wait...
Getting list of correlations for id 4234.
Getting list of p-values for id 4234.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.075 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8031346	8039859	NM_002255	KIR2DL4	0.992308	2.798418e-95	4.848818e-91	4.848818e-91
2	8031346	8031260	NM_153443	KIR3DL3	0.854373	4.790226e-31	8.300025e-27	4.150012e-27
3	8031346	8031297	NM_014218	KIR2DL1	0.840097	4.039660e-29	6.999518e-25	2.333173e-25
4	8031346	8031277	NM_015868	KIR2DL3	0.834304	2.161188e-28	3.744691e-24	9.361727e-25
5	8031346	8039829	NM_014219	KIR2DL2	0.827044	1.617373e-27	2.802422e-23	5.604845e-24
6	8031346	8031311	NM_013289	KIR3DL1	0.826069	2.104019e-27	3.645634e-23	6.076057e-24
7	8031346	8031293	NM_014511	KIR2DL3	0.808495	1.856702e-25	3.217107e-21	4.595867e-22
8	8031346	8031328	NM_006737	KIR3DL2	0.801413	9.927976e-25	1.720220e-20	2.150275e-21
9	8031346	8039820	NM_153443	KIR3DL3	0.798936	1.756665e-24	3.043774e-20	3.381971e-21
10	8031346	8039896	NM_014512	KIR2DS1	0.792324	7.754047e-24	1.343544e-19	1.343544e-20
11	8031346	8031358	NM_012314	KIR2DS4	0.769029	9.710870e-22	1.682603e-17	1.529639e-18
12	8031346	8039842	NM_012312	KIR2DS2	0.768910	9.939344e-22	1.722190e-17	1.435158e-18
13	8031346	8039871	NM_001083539	KIR3DS1	0.754793	1.419409e-20	2.459409e-16	1.891853e-17
14	8031346	8031387	NM_004829	NCR1	0.549180	1.309293e-9	2.268612e-5	1.620437e-6
15	8031346	7934161	NM_005041	PRF1	0.512886	2.220840e-8	3.848049e-4	2.565366e-5
16	8031346	7943892	NM_181351	NCAM1	0.493196	9.030006e-8	1.564629e-3	9.778932e-5
17	8031346	8066641	NM_022095	ZNF335	0.466283	5.354776e-7	9.278221e-3	5.457777e-4
18	8031346	7907430	NM_000639	FASLG	0.464152	6.125914e-7	1.061437e-2	5.896873e-4
19	8031346	8059720	NM_006056	NMUR1	0.461131	7.401950e-7	1.282536e-2	6.750189e-4
20	8031346	7996081	NM_201524	GPR56	0.458722	8.596032e-7	1.489434e-2	7.447172e-4
21	8031346	7921900	NM_053282	SH2D1B	0.453429	1.189329e-6	2.060751e-2	9.813100e-4
22	8031346	8041447	NM_016441	CRIM1	0.452265	1.276347e-6	2.211526e-2	1.005239e-3
23	8031346	8131140	AK024457	LOC100288594	0.452029	1.294764e-6	2.243438e-2	9.754079e-4
24	8031346	8038809	NM_005601	NKG7	0.445577	1.906028e-6	3.302574e-2	1.376072e-3
25	8031346	7923233	NM_017596	KIF21B	0.443683	2.132047e-6	3.694198e-2	1.477679e-3
26	8031346	8000425	NM_001520	GTF3C1	0.440253	2.607126e-6	4.517367e-2	1.737449e-3
27	8031346	7994826	NM_002209	ITGAL	0.436255	3.286995e-6	5.695377e-2	2.109399e-3
28	8031346	8075910	NM_002872	RAC2	0.433546	3.839314e-6	6.652379e-2	2.375850e-3
29	8031346	8009796	NM_014738	KIAA0195	0.431959	4.202690e-6	7.282001e-2	2.511035e-3
30	8031346	7956524	NM_024779	PIP4K2C	0.431602	4.288717e-6	7.431059e-2	2.477020e-3
31	8031346	8075886	NM_000878	IL2RB	0.428764	5.034573e-6	8.723405e-2	2.814002e-3
32	8031346	7944152	NM_001558	IL10RA	0.425812	5.939176e-6	1.029081e-1	3.215878e-3
33	8031346	8003773	NM_015085	RAP1GAP2	0.423699	6.678357e-6	1.157159e-1	3.506542e-3
34	8031346	7967736	NM_006231	POLE	0.420926	7.780620e-6	1.348148e-1	3.965141e-3
35	8031346	8152119	NM_001040624	NCALD	0.418164	9.047600e-6	1.567678e-1	4.479079e-3
36	8031346	8159702	NM_024757	EHMT1	0.417424	9.418522e-6	1.631947e-1	4.533187e-3
37	8031346	hsa-miR-362-3p			-0.416995	9.640001e-6	1.670323e-1	4.514387e-3
38	8031346	7939383	NM_024841	PRR5L	0.416902	9.688733e-6	1.678767e-1	4.417807e-3
39	8031346	8043666	NM_017623	CNNM3	0.414063	1.129105e-5	1.956400e-1	5.016410e-3
40	8031346	7996064	NM_153837	GPR114	0.413437	1.167679e-5	2.023238e-1	5.058094e-3
41	8031346	8090193	NM_020733	HEG1	0.412617	1.220029e-5	2.113944e-1	5.155960e-3
42	8031346	7983132	AK122666	STARD9	0.411736	1.278756e-5	2.215700e-1	5.275476e-3
43	8031346	8053949	NM_017991	KIAA1310	0.411144	1.319675e-5	2.286602e-1	5.317678e-3
44	8031346	8074780	NM_013313	YPEL1	0.408742	1.498718e-5	2.596828e-1	5.901882e-3
45	8031346	8032410	NM_130807	MOBKL2A	0.408218	1.540688e-5	2.669550e-1	5.932334e-3
46	8031346	7930031	NM_004193	GBF1	0.407210	1.624541e-5	2.814842e-1	6.119221e-3
47	8031346	8032871	NM_139159	DPP9	0.407147	1.629946e-5	2.824207e-1	6.008952e-3
48	8031346	8050115	AK127578	C2orf46	0.405875	1.742204e-5	3.018717e-1	6.288993e-3
49	8031346	7929919	NM_030971	SFXN3	0.404376	1.883896e-5	3.264226e-1	6.661686e-3
50	8031346	7974363	NM_000953	PTGDR	0.404077	1.913399e-5	3.315347e-1	6.630694e-3

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
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	with keyword:
	KEGG Pathway:
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Remove	"self correlations", i.e. correlations of a variable with itself
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