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Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Search Options: Find correlations between...
Gene/Label/Number: and (Empty also means "all others")
Output Options
Restrict output to miRs, Transcription factors? (Empty: No restrictions.)
  with keyword:
 KEGG Pathway:
Limit output to rows.
Remove "self correlations", i.e. correlations of a variable with itself
Sort results by positive, negative or absolute value of correlation
Starting timer.
Connected to database on
User requested variable id 12117.
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id Label1 AccNum GeneSym Info Gene Name
12117 8039842 NM_012312 KIR2DS2 link to infopage killer cell immunoglobulin-like receptor, two domains, short cytoplasmic tail, 2

Fetching correlation data, please wait...
Getting list of correlations for id 12117.
Getting list of p-values for id 12117.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.054 seconds. Transmitting 50 results:

Column legend:

Rank Label1 Label2 AccNum GeneSym Info Pearson r Raw p Bonferroni FDR (BH)
1 8039842 8039896 NM_014512 KIR2DS1 link to infopage 0.982189 1.304945e-76 2.261079e-72 2.261079e-72
2 8039842 8031358 NM_012314 KIR2DS4 link to infopage 0.977096 4.843690e-71 8.392662e-67 4.196331e-67
3 8039842 8039829 NM_014219 KIR2DL2 link to infopage 0.973403 9.736643e-68 1.687068e-63 5.623560e-64
4 8039842 8031277 NM_015868 KIR2DL3 link to infopage 0.968996 2.340672e-64 4.055682e-60 1.013920e-60
5 8039842 8031297 NM_014218 KIR2DL1 link to infopage 0.967696 1.878144e-63 3.254261e-59 6.508522e-60
6 8039842 8039871 NM_001083539 KIR3DS1 link to infopage 0.935576 2.287518e-48 3.963582e-44 6.605970e-45
7 8039842 8031260 NM_153443 KIR3DL3 link to infopage 0.915670 1.443978e-42 2.501981e-38 3.574259e-39
8 8039842 8031328 NM_006737 KIR3DL2 link to infopage 0.896679 3.077526e-38 5.332429e-34 6.665536e-35
9 8039842 8031311 NM_013289 KIR3DL1 link to infopage 0.891176 3.858995e-37 6.686480e-33 7.429422e-34
10 8039842 8031293 NM_014511 KIR2DL3 link to infopage 0.854567 4.495561e-31 7.789458e-27 7.789458e-28
11 8039842 8039820 NM_153443 KIR3DL3 link to infopage 0.822458 5.499258e-27 9.528564e-23 8.662331e-24
12 8039842 8039859 NM_002255 KIR2DL4 link to infopage 0.778637 1.421867e-22 2.463670e-18 2.053058e-19
13 8039842 8031346 NM_002255 KIR2DL4 link to infopage 0.768910 9.939344e-22 1.722190e-17 1.324762e-18
14 8039842 7934161 NM_005041 PRF1 link to infopage 0.554892 8.126768e-10 1.408125e-5 1.005804e-6
15 8039842 7943892 NM_181351 NCAM1 link to infopage 0.545476 1.775350e-9 3.076149e-5 2.050766e-6
16 8039842 7978366 NM_004131 GZMB link to infopage 0.529504 6.332084e-9 1.097160e-4 6.857251e-6
17 8039842 8059720 NM_006056 NMUR1 link to infopage 0.505243 3.868570e-8 6.703071e-4 3.942983e-5
18 8039842 7996081 NM_201524 GPR56 link to infopage 0.499310 5.896727e-8 1.021726e-3 5.676255e-5
19 8039842 8075886 NM_000878 IL2RB link to infopage 0.492513 9.465466e-8 1.640081e-3 8.632007e-5
20 8039842 8031387 NM_004829 NCR1 link to infopage 0.488762 1.223589e-7 2.120113e-3 1.060056e-4
21 8039842 8083749 NM_139245 PPM1L link to infopage 0.474000 3.264450e-7 5.656313e-3 2.693483e-4
22 8039842 7907430 NM_000639 FASLG link to infopage 0.471215 3.908124e-7 6.771606e-3 3.078003e-4
23 8039842 8038809 NM_005601 NKG7 link to infopage 0.453748 1.166473e-6 2.021148e-2 8.787599e-4
24 8039842 8034043 NM_030760 S1PR5 link to infopage 0.452296 1.273959e-6 2.207389e-2 9.197455e-4
25 8039842 8098870 NM_012445 SPON2 link to infopage 0.436092 3.317988e-6 5.749078e-2 2.299631e-3
26 8039842 7913805 NM_001031680 RUNX3 link to infopage 0.434183 3.702185e-6 6.414776e-2 2.467222e-3
27 8039842 8124955 NM_001145466 NCR3 link to infopage 0.432720 4.024600e-6 6.973424e-2 2.582750e-3
28 8039842 8179773 NM_001145466 NCR3 link to infopage 0.432720 4.024600e-6 6.973424e-2 2.490509e-3
29 8039842 8178517 NM_001145466 NCR3 link to infopage 0.432720 4.024600e-6 6.973424e-2 2.404629e-3
30 8039842 8073842 NM_017931 TTC38 link to infopage 0.428823 5.017873e-6 8.694468e-2 2.898156e-3
31 8039842 8050115 AK127578 C2orf46 link to infopage 0.424635 6.340911e-6 1.098690e-1 3.544160e-3
32 8039842 8048595 NM_013335 GMPPA link to infopage 0.424326 6.450485e-6 1.117676e-1 3.492736e-3
33 8039842 8159702 NM_024757 EHMT1 link to infopage 0.422723 7.048569e-6 1.221306e-1 3.700926e-3
34 8039842 7941444 NM_001335 CTSW link to infopage 0.420984 7.755961e-6 1.343875e-1 3.952575e-3
35 8039842 8043236 NM_012483 GNLY link to infopage 0.420466 7.979375e-6 1.382586e-1 3.950247e-3
36 8039842 7995492 NM_001114 ADCY7 link to infopage 0.419140 8.579440e-6 1.486560e-1 4.129332e-3
37 8039842 8022531 NM_000271 NPC1 link to infopage 0.412660 1.217260e-5 2.109147e-1 5.700397e-3
38 8039842 7917649 NM_003243 TGFBR3 link to infopage 0.412310 1.240185e-5 2.148869e-1 5.654919e-3
39 8039842 7921900 NM_053282 SH2D1B link to infopage 0.411738 1.278571e-5 2.215381e-1 5.680464e-3
40 8039842 8143307 NM_022740 HIPK2 link to infopage 0.408459 1.521250e-5 2.635870e-1 6.589675e-3
41 8039842 hsa-let-7f-2-3p link to infopage -0.406188 1.713976e-5 2.969806e-1 7.243430e-3
42 8039842 8014925 NM_014815 MED24 link to infopage 0.406012 1.729825e-5 2.997268e-1 7.136353e-3
43 8039842 7994826 NM_002209 ITGAL link to infopage 0.404902 1.833005e-5 3.176047e-1 7.386156e-3
44 8039842 8003773 NM_015085 RAP1GAP2 link to infopage 0.401005 2.242968e-5 3.886391e-1 8.832708e-3
45 8039842 8106393 NM_001992 F2R link to infopage 0.400241 2.332763e-5 4.041979e-1 8.982174e-3
46 8039842 8176026 NM_001456 FLNA link to infopage 0.398351 2.569815e-5 4.452719e-1 9.679824e-3
47 8039842 8099471 NM_031950 FGFBP2 link to infopage 0.397564 2.674926e-5 4.634844e-1 9.861370e-3
48 8039842 8049246 NM_001017915 INPP5D link to infopage 0.395835 2.920320e-5 5.060039e-1 1.054175e-2
49 8039842 7974363 NM_000953 PTGDR link to infopage 0.395026 3.042339e-5 5.271460e-1 1.075808e-2
50 8039842 8098789 NM_005255 GAK link to infopage 0.394692 3.094044e-5 5.361049e-1 1.072210e-2

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

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