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Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Search Options: Find correlations between...
Gene/Label/Number: and (Empty also means "all others")
Output Options
Restrict output to miRs, Transcription factors? (Empty: No restrictions.)
  with keyword:
 KEGG Pathway:
Limit output to rows.
Remove "self correlations", i.e. correlations of a variable with itself
Sort results by positive, negative or absolute value of correlation
Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 2 variables:
id Label1 AccNum GeneSym Info Gene Name
12108 8039829 NM_014219 KIR2DL2 link to infopage killer cell immunoglobulin-like receptor, two domains, long cytoplasmic tail, 2
13609 8031344 AY366242 KIR2DL2 link to infopage killer cell immunoglobulin-like receptor, two domains, long cytoplasmic tail, 2

Fetching correlation data, please wait...
Getting list of correlations for id 12108.
Getting list of p-values for id 12108.
1 of 2 done.
Getting list of correlations for id 13609.
Getting list of p-values for id 13609.
2 of 2 done.
Calculating corrections for multiple testing (n=34654), please wait...
Done; whole program took 0.163 seconds. Transmitting 50 results:

Column legend:

Rank Label1 Label2 AccNum GeneSym Info Pearson r Raw p Bonferroni FDR (BH)
1 8039829 8031277 NM_015868 KIR2DL3 link to infopage 0.990868 1.856685e-91 6.434156e-87 6.434156e-87
2 8039829 8031297 NM_014218 KIR2DL1 link to infopage 0.986892 2.035316e-83 7.053184e-79 3.526592e-79
3 8039829 8039842 NM_012312 KIR2DS2 link to infopage 0.973403 9.736643e-68 3.374136e-63 1.124712e-63
4 8039829 8039896 NM_014512 KIR2DS1 link to infopage 0.973379 1.019343e-67 3.532430e-63 8.831075e-64
5 8039829 8031260 NM_153443 KIR3DL3 link to infopage 0.939966 6.758254e-50 2.342005e-45 4.684011e-46
6 8039829 8031358 NM_012314 KIR2DS4 link to infopage 0.935737 2.019933e-48 6.999877e-44 1.166646e-44
7 8039829 8031328 NM_006737 KIR3DL2 link to infopage 0.907973 1.063101e-40 3.684069e-36 5.262956e-37
8 8039829 8039871 NM_001083539 KIR3DS1 link to infopage 0.899528 7.854954e-39 2.722056e-34 3.402570e-35
9 8039829 8031311 NM_013289 KIR3DL1 link to infopage 0.897088 2.535486e-38 8.786474e-34 9.762749e-35
10 8039829 8031293 NM_014511 KIR2DL3 link to infopage 0.869514 2.508253e-33 8.692101e-29 8.692101e-30
11 8039829 8039859 NM_002255 KIR2DL4 link to infopage 0.836583 1.126144e-28 3.902538e-24 3.547762e-25
12 8039829 8039820 NM_153443 KIR3DL3 link to infopage 0.828952 9.617647e-28 3.332900e-23 2.777416e-24
13 8039829 8031346 NM_002255 KIR2DL4 link to infopage 0.827044 1.617373e-27 5.604845e-23 4.311419e-24
14 8031344 8082552 NM_000539 RHO link to infopage 0.748435 4.436942e-20 1.537578e-15 1.098270e-16
15 8031344 8077781 NM_000551 VHL link to infopage -0.701855 7.405602e-17 2.566337e-12 1.710891e-13
16 8031344 8167797 NM_019067 GNL3L link to infopage -0.700169 9.430435e-17 3.268023e-12 2.042514e-13
17 8031344 8004842 NM_173728 ARHGEF15 link to infopage 0.693351 2.464274e-16 8.539695e-12 5.023350e-13
18 8031344 8029458 NM_001039213 CEACAM16 link to infopage 0.692684 2.702915e-16 9.366681e-12 5.203712e-13
19 8031344 8107530 ENST00000365222 link to infopage 0.690014 3.905139e-16 1.353287e-11 7.122562e-13
20 8031344 8125805 NM_000841 GRM4 link to infopage 0.689381 4.258582e-16 1.475769e-11 7.378845e-13
21 8031344 8049729 NM_198998 AQP12A link to infopage 0.687169 5.754455e-16 1.994149e-11 9.495946e-13
22 8031344 7985459 ENST00000342039 link to infopage 0.682670 1.052913e-15 3.648765e-11 1.658530e-12
23 8031344 7990928 ENST00000342039 link to infopage 0.682670 1.052913e-15 3.648765e-11 1.586420e-12
24 8031344 7985418 ENST00000342039 link to infopage 0.682670 1.052913e-15 3.648765e-11 1.520319e-12
25 8031344 7984892 NM_021819 LMAN1L link to infopage 0.681890 1.167983e-15 4.047530e-11 1.619012e-12
26 8031344 8055096 NM_031445 AMMECR1L link to infopage -0.678573 1.808487e-15 6.267130e-11 2.410435e-12
27 8031344 8038109 NM_017708 FAM83E link to infopage 0.677998 1.949833e-15 6.756951e-11 2.502575e-12
28 8031344 8125038 NR_003673 LY6G6E link to infopage 0.677195 2.165196e-15 7.503272e-11 2.679740e-12
29 8031344 8178582 NR_003673 LY6G6E link to infopage 0.677195 2.165196e-15 7.503272e-11 2.587335e-12
30 8031344 8179810 NR_003673 LY6G6E link to infopage 0.677195 2.165196e-15 7.503272e-11 2.501091e-12
31 8031344 8114550 NM_004883 NRG2 link to infopage 0.676459 2.382526e-15 8.256407e-11 2.663357e-12
32 8031344 8067409 NM_005560 LAMA5 link to infopage 0.676228 2.455155e-15 8.508094e-11 2.658779e-12
33 8031344 7897066 NR_024445 LOC100128003 link to infopage 0.674551 3.049936e-15 1.056925e-10 3.202803e-12
34 8031344 8037732 NM_001029861 NANOS2 link to infopage 0.673199 3.628708e-15 1.257492e-10 3.698507e-12
35 8031344 8060126 NM_198998 AQP12A link to infopage 0.668198 6.848235e-15 2.373187e-10 6.780536e-12
36 8031344 8036055 NM_139284 LGI4 link to infopage 0.668093 6.939799e-15 2.404918e-10 6.680327e-12
37 8031344 8041582 NM_138370 PKDCC link to infopage 0.667688 7.301558e-15 2.530282e-10 6.838600e-12
38 8031344 8011011 NR_024058 YWHAE link to infopage -0.667205 7.757595e-15 2.688317e-10 7.074518e-12
39 8031344 7995340 link to infopage 0.667187 7.775323e-15 2.694460e-10 6.908873e-12
40 8031344 8015323 NM_153490 KRT13 link to infopage 0.666211 8.784485e-15 3.044175e-10 7.610439e-12
41 8031344 7899627 NM_022164 TINAGL1 link to infopage 0.665764 9.288553e-15 3.218855e-10 7.850866e-12
42 8031344 7936096 NM_014976 PDCD11 link to infopage 0.665337 9.795386e-15 3.394493e-10 8.082126e-12
43 8031344 8125825 NM_006703 NUDT3 link to infopage -0.665005 1.020777e-14 3.537400e-10 8.226512e-12
44 8031344 8013042 NM_000422 KRT17 link to infopage 0.664968 1.025543e-14 3.553918e-10 8.077086e-12
45 8031344 8015214 NM_033184 KRTAP2-4 link to infopage 0.664946 1.028256e-14 3.563319e-10 7.918487e-12
46 8031344 8019574 NM_033184 KRTAP2-4 link to infopage 0.664946 1.028256e-14 3.563319e-10 7.746346e-12
47 8031344 8053728 NM_000798 DRD5 link to infopage 0.664526 1.083383e-14 3.754354e-10 7.987987e-12
48 8031344 7994647 NM_145239 PRRT2 link to infopage 0.663923 1.167335e-14 4.045284e-10 8.427674e-12
49 8031344 7899528 NM_000911 OPRD1 link to infopage 0.663109 1.290889e-14 4.473448e-10 9.129485e-12
50 8031344 7972899 BX647655 DKFZp451A211 link to infopage 0.662134 1.455454e-14 5.043730e-10 1.008746e-11

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

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