[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
User requested variable id 9264.
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
9264	8124955	NM_001145466	NCR3		natural cytotoxicity triggering receptor 3

Fetching correlation data, please wait...
Getting list of correlations for id 9264.
Getting list of p-values for id 9264.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.087 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8124955	8178517	NM_001145466	NCR3	1.000000	0.000000e+0	0.000000e+0	0.000000e+0
2	8124955	8179773	NM_001145466	NCR3	1.000000	0.000000e+0	0.000000e+0	0.000000e+0
3	8124955	8032682	NM_139355	MATK	0.593834	2.441081e-11	4.229661e-7	1.409887e-7
4	8124955	8074939	NM_213720	CHCHD10	0.562898	4.101727e-10	7.107062e-6	1.776766e-6
5	8124955	8009844	NM_001031803	LLGL2	0.552505	9.930080e-10	1.720585e-5	3.441170e-6
6	8124955	8039820	NM_153443	KIR3DL3	0.544984	1.848143e-9	3.202277e-5	5.337128e-6
7	8124955	7998367	NM_058192	RPUSD1	0.538181	3.199719e-9	5.544154e-5	7.920219e-6
8	8124955	8137739	NM_001080453	INTS1	0.537118	3.482335e-9	6.033841e-5	7.542302e-6
9	8124955	8031387	NM_004829	NCR1	0.522488	1.084435e-8	1.879000e-4	2.087778e-5
10	8124955	8032009	NM_017550	MIER2	0.520763	1.235520e-8	2.140785e-4	2.140785e-5
11	8124955	7945730	NM_005170	ASCL2	0.518955	1.415423e-8	2.452504e-4	2.229549e-5
12	8124955	8165334	NM_004669	CLIC3	0.514119	2.028102e-8	3.514093e-4	2.928411e-5
13	8124955	8033207	NM_024898	DENND1C	0.512540	2.278025e-8	3.947135e-4	3.036258e-5
14	8124955	8073842	NM_017931	TTC38	0.512031	2.364831e-8	4.097542e-4	2.926816e-5
15	8124955	8098822	NM_001347	DGKQ	0.505959	3.674836e-8	6.367388e-4	4.244926e-5
16	8124955	8023344	NM_001101654	CXXC1	0.505444	3.813140e-8	6.607028e-4	4.129393e-5
17	8124955	7937378	NM_030783	PTDSS2	0.504505	4.078790e-8	7.067320e-4	4.157247e-5
18	8124955	8052024	NM_025133	FBXO11	-0.503494	4.384020e-8	7.596192e-4	4.220107e-5
19	8124955	8027018	BC001080	C19orf50	0.503413	4.409649e-8	7.640599e-4	4.021368e-5
20	8124955	8048647	NM_052902	STK11IP	0.501713	4.976249e-8	8.622346e-4	4.311173e-5
21	8124955	7992954	AK098732	TRAP1	0.498834	6.097848e-8	1.056574e-3	5.031306e-5
22	8124955	8031260	NM_153443	KIR3DL3	0.497125	6.873564e-8	1.190982e-3	5.413557e-5
23	8124955	7998759	NM_001042371	PGP	0.494176	8.438425e-8	1.462126e-3	6.357069e-5
24	8124955	8077786	NM_001570	IRAK2	0.494076	8.496764e-8	1.472234e-3	6.134310e-5
25	8124955	7986160	NM_001039675	UNC45A	0.493449	8.873634e-8	1.537535e-3	6.150138e-5
26	8124955	8087691	NM_001005505	CACNA2D2	0.491841	9.913084e-8	1.717640e-3	6.606308e-5
27	8124955	7998267	NM_001005920	JMJD8	0.491822	9.926177e-8	1.719909e-3	6.370032e-5
28	8124955	8173615	NM_183353	RLIM	-0.489346	1.175907e-7	2.037494e-3	7.276766e-5
29	8124955	8074842	NM_001130111	FAM108A1	0.489229	1.185312e-7	2.053790e-3	7.082033e-5
30	8124955	8005407	NM_004140	LLGL1	0.488337	1.259467e-7	2.182278e-3	7.274260e-5
31	8124955	8026915	NM_015683	ARRDC2	0.488081	1.281590e-7	2.220610e-3	7.163259e-5
32	8124955	8002057	NM_001082486	ACD	0.487817	1.304773e-7	2.260781e-3	7.064940e-5
33	8124955	8116348	NM_198868	TBC1D9B	0.487513	1.331903e-7	2.307789e-3	6.993299e-5
34	8124955	7994985	NM_014712	SETD1A	0.487226	1.358072e-7	2.353132e-3	6.920976e-5
35	8124955	8177885	NM_001517	GTF2H4	0.487186	1.361740e-7	2.359487e-3	6.741392e-5
36	8124955	8118007	NM_001517	GTF2H4	0.487186	1.361740e-7	2.359487e-3	6.554131e-5
37	8124955	8179205	NM_001517	GTF2H4	0.487186	1.361740e-7	2.359487e-3	6.376993e-5
38	8124955	8066641	NM_022095	ZNF335	0.486389	1.437202e-7	2.490239e-3	6.553261e-5
39	8124955	8005697	ENST00000452760		0.486038	1.471593e-7	2.549830e-3	6.538025e-5
40	8124955	8139468	NM_004749	TBRG4	0.483882	1.701100e-7	2.947496e-3	7.368741e-5
41	8124955	8126102	NM_153487	MDGA1	0.483692	1.722990e-7	2.985425e-3	7.281525e-5
42	8124955	8071339	NM_013373	ZDHHC8	0.483533	1.741421e-7	3.017360e-3	7.184192e-5
43	8124955	8178346	NM_005275	GNL1	0.483128	1.789237e-7	3.100212e-3	7.209795e-5
44	8124955	8032480	NM_016199	LSM7	0.481075	2.051444e-7	3.554536e-3	8.078492e-5
45	8124955	8009832	NM_207346	TSEN54	0.480602	2.116833e-7	3.667836e-3	8.150747e-5
46	8124955	7906433	ENST00000410620		0.480599	2.117249e-7	3.668558e-3	7.975125e-5
47	8124955	8071466	NM_006767	LZTR1	0.479544	2.270308e-7	3.933763e-3	8.369708e-5
48	8124955	7899990	NM_014284	NCDN	0.479416	2.289678e-7	3.967326e-3	8.265262e-5
49	8124955	8160531	NM_018325	C9orf72	-0.478596	2.416973e-7	4.187890e-3	8.546714e-5
50	8124955	8019754	NM_207368	FAM195B	0.478544	2.425156e-7	4.202068e-3	8.404135e-5

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
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	KEGG Pathway:
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