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Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Search Options: Find correlations between...
Gene/Label/Number: and (Empty also means "all others")
Output Options
Restrict output to miRs, Transcription factors? (Empty: No restrictions.)
  with keyword:
 KEGG Pathway:
Limit output to rows.
Remove "self correlations", i.e. correlations of a variable with itself
Sort results by positive, negative or absolute value of correlation
Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id Label1 AccNum GeneSym Info Gene Name
5589 7945730 NM_005170 ASCL2 link to infopage achaete-scute complex homolog 2 (Drosophila)

Fetching correlation data, please wait...
Getting list of correlations for id 5589.
Getting list of p-values for id 5589.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.104 seconds. Transmitting 50 results:

Column legend:

Rank Label1 Label2 AccNum GeneSym Info Pearson r Raw p Bonferroni FDR (BH)
1 7945730 8118655 NM_003782 B3GALT4 link to infopage 0.559991 5.268622e-10 9.128942e-6 9.128942e-6
2 7945730 8178264 NM_003782 B3GALT4 link to infopage 0.559991 5.268622e-10 9.128942e-6 4.564471e-6
3 7945730 8179555 NM_003782 B3GALT4 link to infopage 0.559991 5.268622e-10 9.128942e-6 3.042981e-6
4 7945730 7949776 NM_020441 CORO1B link to infopage 0.551913 1.043395e-9 1.807890e-5 4.519724e-6
5 7945730 7992043 BC001181 FAM173A link to infopage 0.551349 1.093654e-9 1.894975e-5 3.789950e-6
6 7945730 7929988 NM_024747 HPS6 link to infopage 0.542734 2.219100e-9 3.845034e-5 6.408391e-6
7 7945730 8032682 NM_139355 MATK link to infopage 0.529865 6.156935e-9 1.066812e-4 1.524017e-5
8 7945730 8034043 NM_030760 S1PR5 link to infopage 0.529635 6.268015e-9 1.086059e-4 1.357574e-5
9 7945730 8009844 NM_001031803 LLGL2 link to infopage 0.527512 7.386216e-9 1.279810e-4 1.422011e-5
10 7945730 7924230 NM_001130111 FAM108A1 link to infopage 0.527285 7.516736e-9 1.302425e-4 1.302425e-5
11 7945730 8030158 NR_027882 BAX link to infopage 0.520686 1.242717e-8 2.153255e-4 1.957505e-5
12 7945730 8179773 NM_001145466 NCR3 link to infopage 0.518955 1.415423e-8 2.452504e-4 2.043753e-5
13 7945730 8178517 NM_001145466 NCR3 link to infopage 0.518955 1.415423e-8 2.452504e-4 1.886541e-5
14 7945730 8124955 NM_001145466 NCR3 link to infopage 0.518955 1.415423e-8 2.452504e-4 1.751788e-5
15 7945730 8036004 NM_004364 CEBPA link to infopage 0.518590 1.454668e-8 2.520503e-4 1.680335e-5
16 7945730 7896754 AK290103 LOC100287934 link to infopage -0.516176 1.741537e-8 3.017561e-4 1.885975e-5
17 7945730 8043203 NM_006634 VAMP5 link to infopage 0.514776 1.931973e-8 3.347530e-4 1.969135e-5
18 7945730 8165334 NM_004669 CLIC3 link to infopage 0.511992 2.371518e-8 4.109130e-4 2.282850e-5
19 7945730 8024273 NM_024407 NDUFS7 link to infopage 0.511465 2.464833e-8 4.270816e-4 2.247798e-5
20 7945730 8165319 NM_018998 FBXW5 link to infopage 0.506224 3.605310e-8 6.246921e-4 3.123461e-5
21 7945730 8071559 NM_022044 SDF2L1 link to infopage 0.505184 3.884941e-8 6.731437e-4 3.205446e-5
22 7945730 7949746 NM_021173 POLD4 link to infopage 0.502730 4.629462e-8 8.021470e-4 3.646123e-5
23 7945730 7998449 NM_001001410 C16orf42 link to infopage 0.501324 5.115382e-8 8.863422e-4 3.853662e-5
24 7945730 8087790 NM_004704 RRP9 link to infopage 0.499694 5.739738e-8 9.945245e-4 4.143852e-5
25 7945730 8028397 NM_174905 FAM98C link to infopage 0.497849 6.534013e-8 1.132148e-3 4.528594e-5
26 7945730 8003401 NM_000485 APRT link to infopage 0.496583 7.138356e-8 1.236863e-3 4.757165e-5
27 7945730 7937813 NM_005706 TSSC4 link to infopage 0.496104 7.380972e-8 1.278901e-3 4.736671e-5
28 7945730 8008029 NM_013351 TBX21 link to infopage 0.495014 7.962281e-8 1.379624e-3 4.927230e-5
29 7945730 8018297 NM_014595 NT5C link to infopage 0.493912 8.594262e-8 1.489128e-3 5.134923e-5
30 7945730 7945573 NM_021128 POLR2L link to infopage 0.493629 8.763814e-8 1.518506e-3 5.061687e-5
31 7945730 8033465 NM_006351 TIMM44 link to infopage 0.493544 8.815655e-8 1.527489e-3 4.927382e-5
32 7945730 8074939 NM_213720 CHCHD10 link to infopage 0.493090 9.096193e-8 1.576097e-3 4.925304e-5
33 7945730 8159566 NM_016219 MAN1B1 link to infopage 0.493032 9.132591e-8 1.582404e-3 4.795164e-5
34 7945730 8008185 NM_016428 ABI3 link to infopage 0.492892 9.221069e-8 1.597735e-3 4.699219e-5
35 7945730 7999423 NM_003745 SOCS1 link to infopage 0.492714 9.334812e-8 1.617443e-3 4.621265e-5
36 7945730 7909990 AK290103 LOC100287934 link to infopage -0.491939 9.846623e-8 1.706124e-3 4.739234e-5
37 7945730 7951133 NM_032427 MAML2 link to infopage -0.491540 1.011993e-7 1.753481e-3 4.739137e-5
38 7945730 7904869 NM_001130111 FAM108A1 link to infopage 0.491050 1.046629e-7 1.813494e-3 4.772353e-5
39 7945730 7904948 NM_001130111 FAM108A1 link to infopage 0.491050 1.046629e-7 1.813494e-3 4.649985e-5
40 7945730 8159541 BC002613 C9orf142 link to infopage 0.487889 1.298424e-7 2.249779e-3 5.624447e-5
41 7945730 7905664 NM_024330 SLC27A3 link to infopage 0.487598 1.324321e-7 2.294651e-3 5.596710e-5
42 7945730 8023977 NM_005317 GZMM link to infopage 0.486836 1.394438e-7 2.416142e-3 5.752720e-5
43 7945730 8131135 NM_018641 CHST12 link to infopage 0.486751 1.402430e-7 2.429991e-3 5.651141e-5
44 7945730 7897329 NM_138350 THAP3 link to infopage 0.485319 1.544628e-7 2.676376e-3 6.082673e-5
45 7945730 8112865 NM_178276 SERINC5 link to infopage -0.484117 1.674571e-7 2.901529e-3 6.447843e-5
46 7945730 8034210 NM_198536 TMEM205 link to infopage 0.483863 1.703269e-7 2.951254e-3 6.415770e-5
47 7945730 8157324 NM_144488 RGS3 link to infopage 0.481776 1.958030e-7 3.392678e-3 7.218464e-5
48 7945730 8074842 NM_001130111 FAM108A1 link to infopage 0.481157 2.040223e-7 3.535095e-3 7.364782e-5
49 7945730 8104901 NM_002185 IL7R link to infopage -0.479270 2.311836e-7 4.005718e-3 8.174935e-5
50 7945730 8020321 AF090940 link to infopage -0.475793 2.904698e-7 5.032971e-3 1.006594e-4

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

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