[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 3 variables:
id	Label1	AccNum	GeneSym	Info	Gene Name
9264	8124955	NM_001145466	NCR3		natural cytotoxicity triggering receptor 3
9265	8178517	NM_001145466	NCR3		natural cytotoxicity triggering receptor 3
9266	8179773	NM_001145466	NCR3		natural cytotoxicity triggering receptor 3

Fetching correlation data, please wait...
Getting list of correlations for id 9264.
Getting list of p-values for id 9264.
1 of 3 done.
Getting list of correlations for id 9265.
Getting list of p-values for id 9265.
2 of 3 done.
Getting list of correlations for id 9266.
Getting list of p-values for id 9266.
3 of 3 done.
Calculating corrections for multiple testing (n=51981), please wait...
Done; whole program took 0.266 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8178517	8179773	NM_001145466	NCR3	1.000000	0.000000e+0	0.000000e+0	0.000000e+0
2	8179773	8178517	NM_001145466	NCR3	1.000000	0.000000e+0	0.000000e+0	0.000000e+0
3	8124955	8178517	NM_001145466	NCR3	1.000000	0.000000e+0	0.000000e+0	0.000000e+0
4	8179773	8124955	NM_001145466	NCR3	1.000000	0.000000e+0	0.000000e+0	0.000000e+0
5	8124955	8179773	NM_001145466	NCR3	1.000000	0.000000e+0	0.000000e+0	0.000000e+0
6	8178517	8124955	NM_001145466	NCR3	1.000000	0.000000e+0	0.000000e+0	0.000000e+0
7	8124955	8032682	NM_139355	MATK	0.593834	2.441081e-11	1.268898e-6	1.812712e-7
8	8179773	8032682	NM_139355	MATK	0.593834	2.441081e-11	1.268898e-6	1.586123e-7
9	8178517	8032682	NM_139355	MATK	0.593834	2.441081e-11	1.268898e-6	1.409887e-7
10	8124955	8074939	NM_213720	CHCHD10	0.562898	4.101727e-10	2.132119e-5	2.132119e-6
11	8179773	8074939	NM_213720	CHCHD10	0.562898	4.101727e-10	2.132119e-5	1.938290e-6
12	8178517	8074939	NM_213720	CHCHD10	0.562898	4.101727e-10	2.132119e-5	1.776766e-6
13	8124955	8009844	NM_001031803	LLGL2	0.552505	9.930080e-10	5.161755e-5	3.970581e-6
14	8179773	8009844	NM_001031803	LLGL2	0.552505	9.930080e-10	5.161755e-5	3.686968e-6
15	8178517	8009844	NM_001031803	LLGL2	0.552505	9.930080e-10	5.161755e-5	3.441170e-6
16	8124955	8039820	NM_153443	KIR3DL3	0.544984	1.848143e-9	9.606830e-5	6.004269e-6
17	8179773	8039820	NM_153443	KIR3DL3	0.544984	1.848143e-9	9.606830e-5	5.651077e-6
18	8178517	8039820	NM_153443	KIR3DL3	0.544984	1.848143e-9	9.606830e-5	5.337128e-6
19	8124955	7998367	NM_058192	RPUSD1	0.538181	3.199719e-9	1.663246e-4	8.753927e-6
20	8179773	7998367	NM_058192	RPUSD1	0.538181	3.199719e-9	1.663246e-4	8.316230e-6
21	8178517	7998367	NM_058192	RPUSD1	0.538181	3.199719e-9	1.663246e-4	7.920219e-6
22	8124955	8137739	NM_001080453	INTS1	0.537118	3.482335e-9	1.810152e-4	8.227965e-6
23	8178517	8137739	NM_001080453	INTS1	0.537118	3.482335e-9	1.810152e-4	7.870228e-6
24	8179773	8137739	NM_001080453	INTS1	0.537118	3.482335e-9	1.810152e-4	7.542302e-6
25	8179773	8031387	NM_004829	NCR1	0.522488	1.084435e-8	5.637001e-4	2.254800e-5
26	8124955	8031387	NM_004829	NCR1	0.522488	1.084435e-8	5.637001e-4	2.168077e-5
27	8178517	8031387	NM_004829	NCR1	0.522488	1.084435e-8	5.637001e-4	2.087778e-5
28	8179773	8032009	NM_017550	MIER2	0.520763	1.235520e-8	6.422356e-4	2.293698e-5
29	8178517	8032009	NM_017550	MIER2	0.520763	1.235520e-8	6.422356e-4	2.214605e-5
30	8124955	8032009	NM_017550	MIER2	0.520763	1.235520e-8	6.422356e-4	2.140785e-5
31	8124955	7945730	NM_005170	ASCL2	0.518955	1.415423e-8	7.357511e-4	2.373390e-5
32	8178517	7945730	NM_005170	ASCL2	0.518955	1.415423e-8	7.357511e-4	2.299222e-5
33	8179773	7945730	NM_005170	ASCL2	0.518955	1.415423e-8	7.357511e-4	2.229549e-5
34	8178517	8165334	NM_004669	CLIC3	0.514119	2.028102e-8	1.054228e-3	3.100670e-5
35	8124955	8165334	NM_004669	CLIC3	0.514119	2.028102e-8	1.054228e-3	3.012080e-5
36	8179773	8165334	NM_004669	CLIC3	0.514119	2.028102e-8	1.054228e-3	2.928411e-5
37	8124955	8033207	NM_024898	DENND1C	0.512540	2.278025e-8	1.184140e-3	3.200380e-5
38	8179773	8033207	NM_024898	DENND1C	0.512540	2.278025e-8	1.184140e-3	3.116159e-5
39	8178517	8033207	NM_024898	DENND1C	0.512540	2.278025e-8	1.184140e-3	3.036258e-5
40	8179773	8073842	NM_017931	TTC38	0.512031	2.364831e-8	1.229263e-3	3.073157e-5
41	8178517	8073842	NM_017931	TTC38	0.512031	2.364831e-8	1.229263e-3	2.998202e-5
42	8124955	8073842	NM_017931	TTC38	0.512031	2.364831e-8	1.229263e-3	2.926816e-5
43	8124955	8098822	NM_001347	DGKQ	0.505959	3.674836e-8	1.910216e-3	4.442364e-5
44	8179773	8098822	NM_001347	DGKQ	0.505959	3.674836e-8	1.910216e-3	4.341401e-5
45	8178517	8098822	NM_001347	DGKQ	0.505959	3.674836e-8	1.910216e-3	4.244926e-5
46	8179773	8023344	NM_001101654	CXXC1	0.505444	3.813140e-8	1.982108e-3	4.308931e-5
47	8124955	8023344	NM_001101654	CXXC1	0.505444	3.813140e-8	1.982108e-3	4.217252e-5
48	8178517	8023344	NM_001101654	CXXC1	0.505444	3.813140e-8	1.982108e-3	4.129393e-5
49	8179773	7937378	NM_030783	PTDSS2	0.504505	4.078790e-8	2.120196e-3	4.326930e-5
50	8178517	7937378	NM_030783	PTDSS2	0.504505	4.078790e-8	2.120196e-3	4.240392e-5

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
Restrict output to	miRs, Transcription factors? (Empty: No restrictions.)
	with keyword:
	KEGG Pathway:
Limit output to	rows.
Remove	"self correlations", i.e. correlations of a variable with itself
Sort results by	positive, negative or absolute value of correlation